1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...attcacatcccatctgatctatgcatgttccttctcttctttctttgcttcttcagtttaatgataacggaactttatatattctgtcccatttctcaagGTTCAAAGGATCGAAAACCATGAAGATGAATGGCGCTACTTTGTCCATTATCTC
species | Zea mays |
transcript | GRMZM2G484880_T05 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGAACGAAAGGGTCCTCGCCTACCACGGCCCCCTCCTCTACGAGGCCAAG GTTCAAAGGATCGAAAACCATGAAGATGAATGGCGCTACTTTGTCCATTATEST: gi|211061512|gb|FK994428.1|FK994428
genomic: AGAACGAAAGGGTCCTCGCCTACCACGGCCCCCTCCTCTACGAGGCCAAGgttcgctatt ... atttctcaagGTTCAAAGGATCGAAAACCATGAAGATGAATGGCGCTACTTTGTCCATTAT
EST: AGAACGAAAGGGTCCTCGCCTACCACGGCCCCCTCCTCTACGAGGCCAAG GTTCAAAGGATCGAAAACCATGAAGATGAATGGCGCTACTTTGTCCATTATEST: gi|211058550|gb|FK994415.1|FK994415
genomic: AGAACGAAAGGGTCCTCGCCTACCACGGCCCCCTCCTCTACGAGGCCAAGgttcgctatt ... atttctcaagGTTCAAAGGATCGAAAACCATGAAGATGAATGGCGCTACTTTGTCCATTAT
EST: AGAACGAAAGGGTCCTCGCCTACCACGGCCCCCTCCTCTACGAGGCCAAG GTTCAAAGGATCGAAAACCATGAAGATGAATGGCGCTACTTTGTCCATTATEST: gi|211058547|gb|FK994412.1|FK994412
genomic: AGAACGAAAGGGTCCTCGCCTACCACGGCCCCCTCCTCTACGAGGCCAAGgttcgctatt ... atttctcaagGTTCAAAGGATCGAAAACCATGAAGATGAATGGCGCTACTTTGTCCATTAT
EST: AGAACGAAAGGGTCCTCGCCTACCACGGCCCCCTCCTCTACGAGGCCAAG GTTCAAAGGATCGAAAACCATGAAGATGAATGGCGCTACTTTGTCCATTATEST: gi|211061507|gb|FK994423.1|FK994423
genomic: AGAACGAAAGGGTCCTCGCCTACCACGGCCCCCTCCTCTACGAGGCCAAGgttcgctatt ... atttctcaagGTTCAAAGGATCGAAAACCATGAAGATGAATGGCGCTACTTTGTCCATTAT
EST: AGAACGAAAGGGTCCTCGCCTACCACGGCCCCCTCCTCTACGAGGCCAAG GTTCAAAGGATCGAAAACCATGAAGATGAATGGCGCTACTTTGTCCATTATEST: gi|211061514|gb|FK994430.1|FK994430
genomic: AGAACGAAAGGGTCCTCGCCTACCACGGCCCCCTCCTCTACGAGGCCAAGgttcgctatt ... atttctcaagGTTCAAAGGATCGAAAACCATGAAGATGAATGGCGCTACTTTGTCCATTAT
EST: AGAACGAWAGGGTCCTCGCCTACCACGGCCCCCTCCTCTACGAGGCCAAG GTTCAAAGGATCGAAAACCATGAAGATGAATGGCGCTACTTTGTCCATTATEST: gi|211058549|gb|FK994414.1|FK994414
genomic: AGAACGAAAGGGTCCTCGCCTACCACGGCCCCCTCCTCTACGAGGCCAAGgttcgctatt ... atttctcaagGTTCAAAGGATCGAAAACCATGAAGATGAATGGCGCTACTTTGTCCATTAT
EST: AGAACGAAAGGGTCCTCGCCTACCACGGCCCCCTCCTCTACGAGGCCAAG GTTCAAAGGATCGAAAACCATGAAGATGAATGGCGCTACTTTGTCCATTATEST: gi|211058545|gb|FK994410.1|FK994410
genomic: AGAACGAAAGGGTCCTCGCCTACCACGGCCCCCTCCTCTACGAGGCCAAGgttcgctatt ... atttctcaagGTTCAAAGGATCGAAAACCATGAAGATGAATGGCGCTACTTTGTCCATTAT
EST: AGAACGAAAGGGTCCTCGCCTACCACGGCCCCCTCCTCTACGAGGCCAAG GTTCAAAGGATCGAAAACCATGAAGATGAATGGCGCTACTTTGTCCATTATEST: gi|93284203|gb|EB676467.1|EB676467
genomic: AGAACGAAAGGGTCCTCGCCTACCACGGCCCCCTCCTCTACGAGGCCAAGgttcgctatt ... atttctcaagGTTCAAAGGATCGAAAACCATGAAGATGAATGGCGCTACTTTGTCCATTAT
EST: AGAACGAAAGGGTCCTCGCCTACCACGGCCCCCTCCTCTACGAGGCCAAG GTTCAAAGGATCGAAAACCATGAAGATGAATGGCGCTACTTTGTCCATTATEST: gi|211058554|gb|FK994419.1|FK994419
genomic: AGAACGAAAGGGTCCTCGCCTACCACGGCCCCCTCCTCTACGAGGCCAAGgttcgctatt ... atttctcaagGTTCAAAGGATCGAAAACCATGAAGATGAATGGCGCTACTTTGTCCATTAT
EST: AGAACGAAAGGGTCCTCGCCTACCACGGCCCCCTCCTCTACGAGGCCAAG GTTCAAAGGATCGAAAACCATGAAGATGAATGGCGCTACTTTGTCCATTATEST: gi|13178287|gb|BG349545.1|BG349545
genomic: AGAACGAAAGGGTCCTCGCCTACCACGGCCCCCTCCTCTACGAGGCCAAGgttcgctatt ... atttctcaagGTTCAAAGGATCGAAAACCATGAAGATGAATGGCGCTACTTTGTCCATTAT
EST: AGAACGAAAGGGTCCTCGCCTACCACGGCCCCCTCCTCTACGAGGCCAAG GTTCAAAGGATCGAAAACCATGAAGATGAATGGCGCTACTTTGTCCATTATEST: gi|211061508|gb|FK994424.1|FK994424
genomic: AGAACGAAAGGGTCCTCGCCTACCACGGCCCCCTCCTCTACGAGGCCAAGgttcgctatt ... atttctcaagGTTCAAAGGATCGAAAACCATGAAGATGAATGGCGCTACTTTGTCCATTAT
EST: AGAACGAAAGGGTCCTCGCCTACCACGGCCCCCTCCTCTACGAGGCCAAG GTTCAAAGGATCGAAAACCATGAAGATGAATGGCGCTACTTTGTCCATTATEST: gi|211061515|gb|FK994431.1|FK994431
genomic: AGAACGAAAGGGTCCTCGCCTACCACGGCCCCCTCCTCTACGAGGCCAAGgttcgctatt ... atttctcaagGTTCAAAGGATCGAAAACCATGAAGATGAATGGCGCTACTTTGTCCATTAT
EST: AGAACGAAAGGGTCCTCGCCTACCACGGCCCCCTCCTCTACGAGGCCAAG GTTCAAAGGATCGAAAACCATGAAGATGAATGGCGCTACTTTGTCCATTATEST: gi|31997934|gb|CD661839.1|CD661839
genomic: AGAACGAAAGGGTCCTCGCCTACCACGGCCCCCTCCTCTACGAGGCCAAGgttcgctatt ... atttctcaagGTTCAAAGGATCGAAAACCATGAAGATGAATGGCGCTACTTTGTCCATTAT
EST: AGAACGAAAGGGTCCTCGCCTACCACGGCCCCCTCCTCTACGAGGCCAAG GTTCAAAGGATCGAAAACCATGAAGATGAATGGCGCTACTTTGTCCATTATEST: gi|211058555|gb|FK994420.1|FK994420
genomic: AGAACGAAAGGGTCCTCGCCTACCACGGCCCCCTCCTCTACGAGGCCAAGgttcgctatt ... atttctcaagGTTCAAAGGATCGAAAACCATGAAGATGAATGGCGCTACTTTGTCCATTAT
EST: AGAACGAAAGGGTCCTCGCCTACCACGGCCCCCTCCTCTACGAGGCCAAG GTTCAAAGGATCGAAAACCATGAAGATGAATGGCGCTACTTTGTCCATTATEST: gi|211061509|gb|FK994425.1|FK994425
genomic: AGAACGAAAGGGTCCTCGCCTACCACGGCCCCCTCCTCTACGAGGCCAAGgttcgctatt ... atttctcaagGTTCAAAGGATCGAAAACCATGAAGATGAATGGCGCTACTTTGTCCATTAT
EST: AGAACGAAAGGGTCCTCGCCTACCACGGCCCCCTCCTCTACGAGGCCAAG GTTCAAAGGATCGAAAACCATGAAGATGAATGGCGCTACTTTGTCCATTATEST: gi|211058548|gb|FK994413.1|FK994413
genomic: AGAACGAAAGGGTCCTCGCCTACCACGGCCCCCTCCTCTACGAGGCCAAGgttcgctatt ... atttctcaagGTTCAAAGGATCGAAAACCATGAAGATGAATGGCGCTACTTTGTCCATTAT
EST: AGAACGAAAGGGTCCTCGCCTACCACGGCCCCCTCCTCTACGAGGCCAAG GTTCAAAGGATCGAAAACCATGAAGATGAATGGCGCTACTTTGTCCATTAT
genomic: AGAACGAAAGGGTCCTCGCCTACCACGGCCCCCTCCTCTACGAGGCCAAGgttcgctatt ... atttctcaagGTTCAAAGGATCGAAAACCATGAAGATGAATGGCGCTACTTTGTCCATTAT
tgcttcttcagtttaatgataacggaactttatatattctgtcccatttctcaagGTTCAAAGGATCGAAAACCATGAAGATGAATGGCGCTACTTTGTCCATTATCTC
tgataac putative branch site (score: 2)
ttctgtcccatttctc putative PPT
aactttatatattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attcacatcccatctgatctatgcatgttccttctcttctttctttgcttcttcagtttaatgataacggaactttatatattctgtcccatttctcaagGTTCAAAGGATCGAAAACCATGAAGATGAATGGCGCTACTTTGTCCATTATCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG