1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aatggcaacgagttaaaaaaagggacttgagatgaaattgatggtccgagcgcacgcaacaccgagtccaccaacgttaacaacgacgaaactcccacagCGCCATAAAACAGAGCGGGCTGCCGCCCGCGCGACACGCTCCGCTTCCCTCCCACTCCCTCACCATCCCTGCCCTGCTCTGCTTTGCTTGCCTAACGGGT
species | Zea mays |
transcript | GRMZM2G478876_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
ccgagcgcacgcaacaccgagtccaccaacgttaacaacgacgaaactcccacagCGCCATAAAACAGAGCGGGCTGCCGCCCGCGCGACACGCTCCGCTTCCCTCCCACTCCCTCACCATCCCTGCCCTGCTCTGCTTTGCTTGCCTAACGGGT
cgttaac putative branch site (score: 3)
ctcccac putative PPT
ttaacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatggcaacgagttaaaaaaagggacttgagatgaaattgatggtccgagcgcacgcaacaccgagtccaccaacgttaacaacgacgaaactcccacagCGCCATAAAACAGAGCGGGCTGCCGCCCGCGCGACACGCTCCGCTTCCCTCCCACTCCCTCACCATCCCTGCCCTGCTCTGCTTTGCTTGCCTAACGGGT
- - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - attgatg
- - - - - - - - - - - - - - - - - - - - - - - - - -gcacgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caccaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaacg