1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tctttgaatgcctcctggaatgaccctatcttcaaatgaccattggaacaacatctcgattgtgtgtgtctgacgatgacatttgtgtcttgttttgcagGCTGAGCTCCACAGTGGTTCTTGCAGAGGTTTCAGGTTTGTAACAGACTGCTGGGGTGAATACACCTACTCAAAAAAAAAAAAAGAGAGAAAATGGGAAA
species | Zea mays |
transcript | GRMZM2G477146_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAGGTGGTCAGGTCTTCTCCGGTCCCTTCGCCGGCGACGTGCACCACCAG GCTGAGCTCCACAGTGGTTCTTGCAGAGGTTTCAGGTTTGTAACAGACTGCEST: gi|76918522|gb|DV167332.1|DV167332
genomic: CAGGTGGTCAGGTCTTCTCCGGTCCCTTCGCCGGCGACGTGCACCACCAGgtacgcccac ... tgttttgcagGCTGAGCTCCACAGTGGTTCTTGCAGAGGTTTCAGGTTTGTAACAGACTGC
EST: CAGGTGGTCAGGTCTTCTCCGGTCCCTTCGCCGGCGACGTGCACCACCAG GCTGAGCTCCACAGTGGTTCTTGCAGAGGTTTCAGGTTTGTAACAGACTGCEST: gi|71332502|gb|DR803214.1|DR803214
genomic: CAGGTGGTCAGGTCTTCTCCGGTCCCTTCGCCGGCGACGTGCACCACCAGgtacgcccac ... tgttttgcagGCTGAGCTCCACAGTGGTTCTTGCAGAGGTTTCAGGTTTGTAACAGACTGC
EST: CAGGTGGTCAGGTCTTCTCCGGTCCCTTCGCCGGCGACGTGCACCACCAG GCTGAGCTCCACAGTGGTTCTTGCAGAGGTTTCAGGTTTGTAACAGACTGC
genomic: CAGGTGGTCAGGTCTTCTCCGGTCCCTTCGCCGGCGACGTGCACCACCAGgtacgcccac ... tgttttgcagGCTGAGCTCCACAGTGGTTCTTGCAGAGGTTTCAGGTTTGTAACAGACTGC
gaacaacatctcgattgtgtgtgtctgacgatgacatttgtgtcttgttttgcagGCTGAGCTCCACAGTGGTTCTTGCAGAGGTTTCAGGTTTGTAACAGACTGCTGGGGTGAATACACCTACTCAAAAAAAAAAAAAGAGAGAAAATGGGAAA
gtctgac putative branch site (score: 57)
tcttgtttt putative PPT
ttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctttgaatgcctcctggaatgaccctatcttcaaatgaccattggaacaacatctcgattgtgtgtgtctgacgatgacatttgtgtcttgttttgcagGCTGAGCTCCACAGTGGTTCTTGCAGAGGTTTCAGGTTTGTAACAGACTGCTGGGGTGAATACACCTACTCAAAAAAAAAAAAAGAGAGAAAATGGGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - tgaatgc
- - - - - -ctcctgg
- - - - - - - - - - - - - - - - - - - - - - - aacaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgacatt