ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq
PPT, BS, UA-tract
cis-regulatory elements

Sequence

atgc intronic sequence ATGC exonic sequence

...aaagagctgttagtaggcacacatttctttcattagttaatgtgtattttatggggatatctgattgggaactaatatacattcctttttaatgttacagTTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACTGGTGAGGAAATTAACAACAAGAGGCAATTACTTCAGTACCTAAAGGCAC

Basic information

species	Zea mays
transcript	GRMZM2G476933_T01
intron #	1
splice site	3'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G476933_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os12g42550.2 (Oryza sativa), 3'ss of exon 1

aaagagctgttagtaggcacacatttctttcattagttaatgtgtattttatggggatatctgattggg--aactaatatacattcctttttaatgttacagTTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACTGGTGAGGAAATTAACAACAAGAGGCAATTACTTCAGTACCTAAAGGCAC------------
           | | |  ||| |    | |   |||  | | ||||||  ||      || |||| |    || ||| || | |   || ||  | ||  |||||||||||  |||||||||||||| ||||||||||||||||||||||||||| || || ||||| |||||||| ||  |    ||||| || |||||||            
-----------aat-gttacaaagaaatgtttgtaggca-tatgtattgcattcat-catttgatagcatcaattaacatccttgatttctttctattgtagtttactccccagAGAGGGGGGAGATTTGAGATTGTTTTTGTTTCACCAACTGGAGAAGAGATTAAGAACAAGAGACAGCTGAGCCAGTATCTGAAGGCACACCCTGGAGGCC

upper sequence: GRMZM2G476933_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os12g42550.1 (Oryza sativa), 3'ss of exon 1

aaagagctgttagtaggcacacatttctttcattagttaatgtgtattttatggggatatctgattggg--aactaatatacattcctttttaatgttacagTTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACTGGTGAGGAAATTAACAACAAGAGGCAATTACTTCAGTACCTAAAGGCAC
       ||||    |  ||| |    | |   |||  | | ||||||  ||      || |||| |    || ||| || | |   || ||  | ||  |||||||||||  |||||||||||||| ||||||||||||||||||||||||||| || || ||||| |||||||| ||  |    ||||| || |||||||
tttattttgtttaatgttacaaagaaatgtttgtaggca-tatgtattgcattcat-catttgatagcatcaattaacatccttgatttctttctattgtagTTTACTCCCCAGAGAGGGGGGAGATTTGAGATTGTTTTTGTTTCACCAACTGGAGAAGAGATTAAGAACAAGAGACAGCTGAGCCAGTATCTGAAGGCAC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|23199769|gb|BU582334.1|BU582334

EST:     CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAG                         TTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT
genomic: CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAGgtagggggtc ... aatgttacagTTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT

EST: gi|211079603|gb|FL173106.1|FL173106

EST:     CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAG                         TTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT
genomic: CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAGgtagggggtc ... aatgttacagTTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT

EST: gi|148969588|gb|EE020424.2|EE020424

EST:     CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAG                         TTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT
genomic: CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAGgtagggggtc ... aatgttacagTTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT

EST: gi|31353919|gb|CD438276.1|CD438276

EST:     CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAG                         TTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT
genomic: CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAGgtagggggtc ... aatgttacagTTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT

EST: gi|149086199|gb|EE175739.2|EE175739

EST:     CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAG                         TTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT
genomic: CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAGgtagggggtc ... aatgttacagTTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT

EST: gi|211079597|gb|FL173100.1|FL173100

EST:     CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAG                         TTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT
genomic: CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAGgtagggggtc ... aatgttacagTTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT

EST: gi|149080723|gb|EE169784.2|EE169784

EST:     CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAG                         TTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTCTGTTTCACCAACT
genomic: CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAGgtagggggtc ... aatgttacagTTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT

EST: gi|149086859|gb|EE176403.2|EE176403

EST:     CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAG                         TTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT
genomic: CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAGgtagggggtc ... aatgttacagTTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT

EST: gi|149069892|gb|EE158289.2|EE158289

EST:     CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAG                         TTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT
genomic: CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAGgtagggggtc ... aatgttacagTTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT

EST: gi|23199674|gb|BU582239.1|BU582239

EST:     GGAGGTCGTGTCCGCTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAG                         TTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT
genomic: GGAGGTCGTGTCCG-TCGAGATGCCCGCACCCGACGGGTGGACCAAGAAGgtagggggtc ... aatgttacagTTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT

EST: gi|149070031|gb|EE158432.2|EE158432

EST:     CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAG                         TTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT
genomic: CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAGgtagggggtc ... aatgttacagTTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT

EST: gi|211076871|gb|FL173099.1|FL173099

EST:     CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAG                         TTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT
genomic: CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAGgtagggggtc ... aatgttacagTTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT

EST: gi|22521399|gb|BU080210.1|BU080210

EST:     CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAG                         TTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT
genomic: CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAGgtagggggtc ... aatgttacagTTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT

EST: gi|149098547|gb|EE184535.2|EE184535

EST:     CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAG                         TTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT
genomic: CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAGgtagggggtc ... aatgttacagTTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT

EST: gi|211079611|gb|FL173114.1|FL173114

EST:     CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAG                         TTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT
genomic: CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAGgtagggggtc ... aatgttacagTTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT

EST: gi|148982281|gb|EE028230.2|EE028230

EST:     CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAG                         TTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT
genomic: CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAGgtagggggtc ... aatgttacagTTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT

EST: gi|211076868|gb|FL173096.1|FL173096

EST:     CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAG                         TTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT
genomic: CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAGgtagggggtc ... aatgttacagTTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT

EST: gi|211076863|gb|FL173091.1|FL173091

EST:     CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAG                         TTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT
genomic: CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAGgtagggggtc ... aatgttacagTTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT

EST: gi|71431687|gb|DR812737.1|DR812737

EST:     CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAG                         TTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT
genomic: CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAGgtagggggtc ... aatgttacagTTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT

EST: gi|211076867|gb|FL173095.1|FL173095

EST:     CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAG                         TTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT
genomic: CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAGgtagggggtc ... aatgttacagTTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT

EST: gi|149046685|gb|EE048075.2|EE048075

EST:     CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAG                         TTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT
genomic: CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAGgtagggggtc ... aatgttacagTTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT

EST: gi|5268616|gb|AI770580.1|AI770580

EST:     CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAG                         TTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT
genomic: CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAGgtagggggtc ... aatgttacagTTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT

EST: gi|71757691|gb|DR955628.1|DR955628

EST:     CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAG                         TTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT
genomic: CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAGgtagggggtc ... aatgttacagTTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT

EST: gi|22542114|gb|BU092552.1|BU092552

EST:     CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGT-GACCAAGAAG                         TTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT
genomic: CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAGgtagggggtc ... aatgttacagTTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT

EST: gi|148966344|gb|EE017331.2|EE017331

EST:     CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAG                         TTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT
genomic: CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAGgtagggggtc ... aatgttacagTTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT

EST: gi|149004787|gb|EE039289.2|EE039289

EST:     CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAG                         TTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT
genomic: CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAGgtagggggtc ... aatgttacagTTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT

EST: gi|148938125|gb|EC882396.2|EC882396

EST:     CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAG                         TTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT
genomic: CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAGgtagggggtc ... aatgttacagTTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT

EST: gi|87156591|gb|DY401380.1|DY401380

EST:     CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAG                         TTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT
genomic: CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAGgtagggggtc ... aatgttacagTTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT

EST: gi|149083281|gb|EE172567.2|EE172567

EST:     CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAG                         TTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT
genomic: CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAGgtagggggtc ... aatgttacagTTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT

EST: gi|211076865|gb|FL173093.1|FL173093

EST:     CGGANGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAG                         TTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT
genomic: CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAGgtagggggtc ... aatgttacagTTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT

EST: gi|148947078|gb|EC892380.2|EC892380

EST:     CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAG                         TTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT
genomic: CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAGgtagggggtc ... aatgttacagTTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT

EST: gi|5566721|gb|AI881737.1|AI881737

EST:     CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAG                         TTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT
genomic: CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAGgtagggggtc ... aatgttacagTTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT

EST: gi|149087740|gb|EE177078.2|EE177078

EST:     CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAG                         TTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT
genomic: CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAGgtagggggtc ... aatgttacagTTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT

EST: gi|211079599|gb|FL173102.1|FL173102

EST:     CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAG                         TTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT
genomic: CGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAGgtagggggtc ... aatgttacagTTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACT

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 18 (downstream exon)
Score: 188

CTAGGGATAACGCACACCCACCACCATGGCGACGCCCGGAGAGCAGCCGGCGGAGGTCGTGTCCGTCGAGATGCCCGCACCCGACGGGTGGACCAAGAAGgtagggggtc ... aatgttacagTTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACTGGTGAGGAAATTAACAACAAGAGGCAATTACTTCAGTACCTAAAGGCAC

Block sizes: 49 (upstream exon), 18 (downstream exon)
Score: 105

Block sizes: 49 (upstream exon), 18 (downstream exon)
Score: 94

Block sizes: 49 (upstream exon), 17 (downstream exon)
Score: 144

atgc intronic sequence ATGC exonic sequence

Intronic sequence truncated to 55 bases.

attttatggggatatctgattgggaactaatatacattcctttttaatgttacagTTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACTGGTGAGGAAATTAACAACAAGAGGCAATTACTTCAGTACCTAAAGGCAC

                                    ttccttttta  CT-rich tract
                           taatatacattccttt  TA-rich tract

Putative cis-regulatory sequences

atgc	intron	ATGC	exonic elements by Pertea et al.
ATGC	exon	atgc	putative intronic elements
		ATGC	putative exonic elements identified for retained introns

        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aaagagctgttagtaggcacacatttctttcattagttaatgtgtattttatggggatatctgattgggaactaatatacattcctttttaatgttacagTTTACTCCCTTGAGAGGGGGGAGATCTGAGATTGTTTTTGTTTCACCAACTGGTGAGGAAATTAACAACAAGAGGCAATTACTTCAGTACCTAAAGGCAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG
- - agctgtt
- - - - - - - - gcacaca
- - - - - - - - - - - - - -tttcatt
- - - - - - - - - - - - - - - - - - - - - tgtattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaactaa