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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtcatcgaagcttagtcctgcacttttgcataggaatcggcggcaccgtgtcacaccgggaataccagattgaattattactaaattcagcatttgtgcagCCACCAGCTGATCAAACACCAGATAGTTCTCCACCTGCATTTAAGCATGTGCTACGTCAGCCTATAATAGAAAATGG

Basic information

species Zea mays
transcript GRMZM2G475968_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G475968_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os06g44230.1 (Oryza sativa), 3'ss of exon 2
----------------------gttagtcatcgaagcttagtcc--tgcacttttgcataggaatcggcggcaccgtgtcaca-ccgggaat--accagattgaattattactaaattcagcatttgtgcagCCACCAGCTGATCAAACACCAGATAGTTCTCCACCTGCATTTAAGCATGTGCTACGTCAGCCTATAATAGAAAATGG
                         | |||        | |||   |||| |     ||   || |  |      ||    ||    || |    |  |||||| || |||||  ||||||| ||||| ||| |||||||||| ||||||||||| |||||||||  |  |||  | ||     ||                       
gtgtttttttgcccactacacctgcaatcacaaccttcttgtcttatgcattgcaaaatcttaaccctctttttggtactgcagTTAGGGACCCGCTTGATTGAGTTGTTACTGGATTCAGCTTTTGTACAGTCACCAGCTGACCAAACACCAGAGAGTTCTCCAGAT--ATTCGACCAGCATTTA-----------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtgtcacaccgggaataccagattgaattattactaaattcagcatttgtgcagCCACCAGCTGATCAAACACCAGATAGTTCTCCACCTGCATTTAAGCATGTGCTACGTCAGCCTATAATAGAAAATGG
                                tactaaa  putative branch site (score: 1)
                    agattgaattattact  TA-rich tract