1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ggtcactggtagtaaaaaatccagaaacagacacagacctatcttctttctctctttgttaatcatgtatggtcattaattgagtcctcttgctgattagGTTCAAGAATGCTATGAGGTAGCTGCTGAGTATGAAACAAAACATGACTTGCAAAAGCTTGATGAACTCGGGAAGATGATAACAAGCTTGGATCCTGGGG
species | Zea mays |
transcript | GRMZM2G473001_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGTTCCTCGACATCCTTCAGGACCTCCATGGCGACGACCTCAAGGAAATG GTTCAAGAATGCTATGAGGTAGCTGCTGAGTATGAAACAAAACATGACTTGEST: gi|211339619|gb|FL314152.1|FL314152
genomic: GGTTCCTCGACATCCTTCAGGACCTCCATGGCGACGACCTCAAGGAAATGgtacctattc ... tgctgattagGTTCAAGAATGCTATGAGGTAGCTGCTGAGTATGAAACAAAACATGACTTG
EST: GGTTCCTCGACATCCTTCAGGACCTCCATGGCGACGACCTCAAGGAAATG GTTCAAGAATGCTATGAGGTAGCTGCTGAGTATGAAACAAAACATGACTTG
genomic: GGTTCCTCGACATCCTTCAGGACCTCCATGGCGACGACCTCAAGGAAATGgtacctattc ... tgctgattagGTTCAAGAATGCTATGAGGTAGCTGCTGAGTATGAAACAAAACATGACTTG
ctttctctctttgttaatcatgtatggtcattaattgagtcctcttgctgattagGTTCAAGAATGCTATGAGGTAGCTGCTGAGTATGAAACAAAACATGACTTGCAAAAGCTTGATGAACTCGGGAAGATGATAACAAGCTTGGATCCTGGGG
cattaat putative branch site (score: 3)
tcctcttgct putative PPT
tttgttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtcactggtagtaaaaaatccagaaacagacacagacctatcttctttctctctttgttaatcatgtatggtcattaattgagtcctcttgctgattagGTTCAAGAATGCTATGAGGTAGCTGCTGAGTATGAAACAAAACATGACTTGCAAAAGCTTGATGAACTCGGGAAGATGATAACAAGCTTGGATCCTGGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - -aaaaaat
- - - - - - - - - - - - aaacaga
- - - - - - - - - - - - - - - -cacagac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgtatg