1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgagtgcattttcatacttgggttaatcttgtcacttgtgtgccagtgttcacgtagatgtgtaaaaatggtctacctgaatgaaagttccatagagaaatgacaatgttaacttattgttgtttcagGTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAAGCTTACCGTTCAATTTTCAGAGGCGTCTGCTGCCCAAGATAGGAAATTG
species | Zea mays |
transcript | GRMZM2G472770_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAG GTGGGTTGGTGTAGGTGATGCTACAGGGEST: gi|211352036|gb|FK991805.1|FK991805
genomic: CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAGgtgagtgcat ... gttgtttcagGTGGGTTGGTGTAGGTGATGCTACAGGG
EST: CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAG GTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAAEST: gi|211349624|gb|FK991787.1|FK991787
genomic: CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAGgtgagtgcat ... gttgtttcagGTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAA
EST: CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAG GTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAAEST: gi|211352030|gb|FK991799.1|FK991799
genomic: CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAGgtgagtgcat ... gttgtttcagGTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAA
EST: CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAG GTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAAEST: gi|211354437|gb|FK991814.1|FK991814
genomic: CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAGgtgagtgcat ... gttgtttcagGTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAA
EST: CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAG GTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAAEST: gi|211349625|gb|FK991788.1|FK991788
genomic: CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAGgtgagtgcat ... gttgtttcagGTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAA
EST: CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAG GTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAAEST: gi|211352034|gb|FK991803.1|FK991803
genomic: CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAGgtgagtgcat ... gttgtttcagGTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAA
EST: CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAG GTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAAEST: gi|211349631|gb|FK991794.1|FK991794
genomic: CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAGgtgagtgcat ... gttgtttcagGTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAA
EST: CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAG GTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAAEST: gi|211349629|gb|FK991792.1|FK991792
genomic: CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAGgtgagtgcat ... gttgtttcagGTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAA
EST: CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAG GTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAAEST: gi|211349628|gb|FK991791.1|FK991791
genomic: CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAGgtgagtgcat ... gttgtttcagGTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAA
EST: CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAG GTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAAEST: gi|211354436|gb|FK991813.1|FK991813
genomic: CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAGgtgagtgcat ... gttgtttcagGTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAA
EST: CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAG GTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAAEST: gi|211352032|gb|FK991801.1|FK991801
genomic: CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAGgtgagtgcat ... gttgtttcagGTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAA
EST: CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAG GTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAAEST: gi|211352033|gb|FK991802.1|FK991802
genomic: CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAGgtgagtgcat ... gttgtttcagGTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAA
EST: CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAG GTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAAEST: gi|211352029|gb|FK991798.1|FK991798
genomic: CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAGgtgagtgcat ... gttgtttcagGTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAA
EST: CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAG GTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAAEST: gi|211352037|gb|FK991806.1|FK991806
genomic: CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAGgtgagtgcat ... gttgtttcagGTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAA
EST: CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAG GTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAAEST: gi|211352038|gb|FK991807.1|FK991807
genomic: CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAGgtgagtgcat ... gttgtttcagGTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAA
EST: CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAG GTGGGTTGGTGTAGG
genomic: CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAGgtgagtgcat ... gttgtttcagGTGGGTTGGTGTAGG
tacctgaatgaaagttccatagagaaatgacaatgttaacttattgttgtttcagGTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAAGCTTACCGTTCAATTTTCAGAGGCGTCTGCTGCCCAAGATAGGAAATTG
tgttaac putative branch site (score: 93)
ttgtttc putative PPT
aatgttaacttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgcattttcatacttgggttaatcttgtcacttgtgtgccagtgttcacgtagatgtgtaaaaatggtctacctgaatgaaagttccatagagaaatgacaatgttaacttattgttgtttcagGTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAAGCTTACCGTTCAATTTTCAGAGGCGTCTGCTGCCCAAGATAGGAAATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC