1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgagcgagtgccccagatccggagctgggctcggatctgcggccgtggtcgcggctgggcgcctcccgatctgctgcctccgcgagcgacgttgctaatggtggtggcctgtctattttttcctctctcactttccgtttgtgttgcagAAGAAGGAAGGGGAAGGGGGAGACACTGTTACGGGTCACATCATCTCCACCACCATCGGTGGGAAGAACGGCGAGCCGAAGCGG
species | Zea mays |
transcript | GRMZM2G472625_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTGCCGACGCCGCAGCCGCGGCGCCGGTTCCCCCTGCCGTCAGCGACAAG AAGAAGGAAGGGGAAGGGGGAGACACTGTTACGGGCCACATCATCTCCACCEST: gi|211127223|gb|FL138012.1|FL138012
genomic: CAGCCGACGCCGCAGCCGCGGCGCCGGTTCCCCCCGCCGTCAGCGACAAGgtgagcgagt ... tgtgttgcagAAGAAGGAAGGGGAAGGGGGAGACACTGTTACGGGTCACATCATCTCCACC
EST: CTGCCGACGCCGCAGCCGCGGCGCCGGTTCCCCCTGCCGTCAGCGACAAG AAGAAGGAAGGGGAAGGGGGAGACACTGTTACGGGCCACATCATCTCCACCEST: gi|211126301|gb|FL138002.1|FL138002
genomic: CAGCCGACGCCGCAGCCGCGGCGCCGGTTCCCCCCGCCGTCAGCGACAAGgtgagcgagt ... tgtgttgcagAAGAAGGAAGGGGAAGGGGGAGACACTGTTACGGGTCACATCATCTCCACC
EST: CTGCCGACGCCGCAGCCGCGGCGCCGGTTCCCCCTGCCGTCAGCGACAAG AAGAAGGAAGGGGAAGGGGGAGACACTGTTACGGGCCACATCATCTCCACC
genomic: CAGCCGACGCCGCAGCCGCGGCGCCGGTTCCCCCCGCCGTCAGCGACAAGgtgagcgagt ... tgtgttgcagAAGAAGGAAGGGGAAGGGGGAGACACTGTTACGGGTCACATCATCTCCACC
ctaatggtggtggcctgtctattttttcctctctcactttccgtttgtgttgcagAAGAAGGAAGGGGAAGGGGGAGACACTGTTACGGGTCACATCATCTCCACCACCATCGGTGGGAAGAACGGCGAGCCGAAGCGG
cctgtctattttttcc CT-rich tract
tctatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcgagtgccccagatccggagctgggctcggatctgcggccgtggtcgcggctgggcgcctcccgatctgctgcctccgcgagcgacgttgctaatggtggtggcctgtctattttttcctctctcactttccgtttgtgttgcagAAGAAGGAAGGGGAAGGGGGAGACACTGTTACGGGTCACATCATCTCCACCACCATCGGTGGGAAGAACGGCGAGCCGAAGCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC