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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtagccagatcggttacttcatatatatactactactcatcatatggatcgatggacatgtggcctcaacacgcaagAACTTGTAGATCACCCATGGATCAAAGAAGACGGAGACGCACCAGACACGCCACTTGACAACGTTGTTCTCGACAGGCTCAAGCAGTTCAGGGCCATGAA

Basic information

species Zea mays
transcript GRMZM2G472311_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G472311_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os12g03970.1 (Oryza sativa), 3'ss of exon 1
--------------------gtaagtagccagatcggttactt-----catatata--tactact---actcatcat--atggatcgatgg-------acatgtggcctcaacacg--caa---gAACTTGTAGATCACCCATGGATCAAAGAAGACGGAGACGCACCAGACACGCCACTTGACAACGTTGTTCTCGACAGGCTCAAGCAGTTCAGGGCCATGAA---------
                     ||| ||  || ||| | | |||     |||||| |  |||   |   | | ||  |   |  || | ||        | || |||  |||    |  |||   | | ||| ||||||||| |||||||||||||| || || || || ||    ||||||||||| ||||||||| ||||||||||||||||||||||||||||         
gtaagtttatttgttacagattaattactcaaatctgctcctttttttcatatagaggtacagtttggattaattttcccttaattggtgtcagaattaaatttggattcatttggatcaatttggatttgcagATCACCCGTGGATCAAAGAAGATGGGGATGCTCCTGATGTACCACTTGACAATGTTGTTCTCAACAGGCTCAAGCAGTTCAGGGCCATGAACCAGTTCAA

upper sequence: GRMZM2G472311_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os11g04170.1 (Oryza sativa), 3'ss of exon 1
--------------------gtaagtagccagatcggttactt-------catata-----------tatactactactcatcatatggatc---gatggacatgtggcctcaacacg--caa---gAACTTGTAGATCACCCATGGATCAAAGAAGACGGAGACGCACCAGACACGCCACTTGACAACGTTGTTCTCGACAGGCTCAAGCAGTTCAGGGCCATGAA---------
                     ||| ||  || ||| | | |||       ||||||           |  | || |  ||    ||| | |    ||   | || |||  |||    |  |||   | | ||| ||||||||| |||||||||||||| || || || || ||    ||||||||||| ||||||||| ||||||||||||||||||||||||||||         
gtaagtttatttgttacagattaattactcaaatctgctcctttttttttcatatagaggtacagtttggattaattttccctttattggtgtcagaattaaatttggattcatttggatcaatttggatttgcagATCACCCGTGGATCAAAGAAGATGGGGATGCTCCTGATGTACCACTTGACAATGTTGTTCTCAACAGGCTCAAGCAGTTCAGGGCCATGAACCAGTTCAA

upper sequence: GRMZM2G472311_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA02G44720.1 (Glycine max), 3'ss of exon 3
----------------------------gtaagtagccagat-cggttacttcatatat--atactactactcatcatatggatcgatggacatgtggcctcaacacgcaagAACTTGT--------------AGATCACCCATGGATCAAAGAAGACGGAGACGCACCAGACACGCCACTTGACAACGTTGTTCTCGACAGGCTCAAGCAGTTCAGGGCCATGAA---------
                            | |     | | ||    ||  || | ||||  ||  |||||     |     ||| | |  | |||       || |    | |  ||                |||||| ||||||||||| || || ||||| |||||||| || || ||||||||||  || ||  | |||||||| |||||||| || |||||         
gtacgtataatattgacttcctttctatgaattcgactacatgttcttgatttacatattaattttactatagcccgggcagattggttca-atgcaattctaataaagcacattttactttatgtgaaaaacagATCATCCATGGATCAAGGAGGATGGAGAAGCACCAGATACACCTCTTGACAACGCAGTACTGAATAGGCTCAAACAGTTCAGAGCAATGAACGAATTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatatactactactcatcatatggatcgatggacatgtggcctcaacacgcaagAACTTGTAGATCACCCATGGATCAAAGAAGACGGAGACGCACCAGACACGCCACTTGACAACGTTGTTCTCGACAGGCTCAAGCAGTTCAGGGCCATGAA
                atcatat  TA-rich tract