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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttcttgactcttgccctctgttatgttcctcccctctctgtctgtccctggcaaaacgggcttatgcttcttcttcttcttcttcttctttttgttcgctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGGATTACCATTACGAGCCAAAG

Basic information

species Zea mays
transcript GRMZM2G470499_T06
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50332849|gb|CO527975.1|CO527975
EST:     GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: gi|71309564|gb|DR791060.1|DR791060
EST:     GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: gi|50332848|gb|CO527974.1|CO527974
EST:     GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaacgggcttatgcttcttcttcttcttcttcttctttttgttcgctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGGATTACCATTACGAGCCAAAG
       cttatgcttcttcttc  CT-rich tract
                                ttcttttt  TA-rich tract