1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatgcacgcacggacggacgctggagctccttaactgcgagtgggtctgtctgacactggagctcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT
species | Zea mays |
transcript | GRMZM2G470499_T05 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTTCCATCTCCACG GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCGEST: gi|101401541|gb|EB822450.1|EB822450
genomic: CTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAG-TTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCGEST: gi|71315889|gb|DR794631.1|DR794631
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCGEST: gi|71430040|gb|DR811090.1|DR811090
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCGEST: gi|149012054|gb|EE042472.2|EE042472
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCGEST: gi|148972877|gb|EE023879.2|EE023879
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCGEST: gi|71303565|gb|DR787892.1|DR787892
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
cgctggagctccttaactgcgagtgggtctgtctgacactggagctcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT
gtctgac putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcacgcacggacggacgctggagctccttaactgcgagtgggtctgtctgacactggagctcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA