Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcacgcacggacggacgctggagctccttaactgcgagtgggtctgtctgacactggagctcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT

Basic information

species Zea mays
transcript GRMZM2G470499_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G470499_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g54700.1 (Oryza sativa), 3'ss of exon 2
gtatgcacgcacggacggacgctgga-----gctcctta----actgcgagtgggtctgtctgacactggagctcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT
||| | ||   | | |||| | || |     | | | |      ||| |  | | |  | |||||||  | | | ||| || |   |||| || ||| ||||| |||||||||||||| ||||||||| ||||||||| ||||| || |||||||||||||| |||||||| ||||
gtaagtacttgctgccggatgatgtaccattgttgcgtgtaatgctggggcttgcttgggctgacacgagtggttggtttctg---cagGTAGCGGCCGGCCGGCGCTGGACTGGCCGCGGCGGTGGAAGATCGCGGTCGGCTCGGCCAAGGGCCTCGCGTATCTGCACGAGGACT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29947640|gb|CB816761.1|CB816761
EST:     GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: gi|148978505|gb|EE026185.2|EE026185
EST:     GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: gi|78112448|gb|DV530842.1|DV530842
EST:     GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: gi|149047014|gb|EE048127.2|EE048127
EST:     GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: gi|148972018|gb|EE022845.2|EE022845
EST:     GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: gi|148964344|gb|EE015510.2|EE015510
EST:     GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCTCG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: gi|149104429|gb|EE289873.2|EE289873
EST:     GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: gi|148963688|gb|EE014752.2|EE014752
EST:     CCCAACAAGACCCTGGAGTTCCTTCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: CCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: gi|71420918|gb|DR805233.1|DR805233
EST:     GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: gi|148975404|gb|EE025705.2|EE025705
EST:     GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: gi|71303563|gb|DR787891.1|DR787891
EST:     GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: gi|94477154|gb|EB706112.1|EB706112
EST:     GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: gi|88757256|gb|DY541397.1|DY541397
EST:     GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: gi|101401541|gb|EB822450.1|EB822450
EST:     GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: gi|91052445|gb|EB162863.1|EB162863
EST:     GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: gi|71763595|gb|DR961532.1|DR961532
EST:     GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: gi|86468915|gb|DY235285.1|DY235285
EST:     GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: gi|149111118|gb|EE294614.2|EE294614
EST:     GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: gi|71315889|gb|DR794631.1|DR794631
EST:     GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: gi|101401539|gb|EB822449.1|EB822449
EST:     GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: gi|71316884|gb|DR795129.1|DR795129
EST:     ACGAGTACGTGCCCACCAAGACCCTCGAGTCCCATCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGA-GCGGGTGGAGGATC
genomic: ACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGC-GGTGGAGGATC
EST: gi|71315688|gb|DR794465.1|DR794465
EST:     GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: gi|71430040|gb|DR811090.1|DR811090
EST:     GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: gi|50330456|gb|CO525582.1|CO525582
EST:     GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: gi|71758981|gb|DR956918.1|DR956918
EST:     GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: gi|148952545|gb|EC898375.2|EC898375
EST:     GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: gi|71311557|gb|DR792145.1|DR792145
EST:     GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: gi|50331964|gb|CO527090.1|CO527090
EST:     GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: gi|93284475|gb|EB676739.1|EB676739
EST:     GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: gi|149012054|gb|EE042472.2|EE042472
EST:     GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: gi|149095899|gb|EE181560.2|EE181560
EST:     GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: gi|78090522|gb|DV518896.1|DV518896
EST:     GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: gi|86467237|gb|DY233607.1|DY233607
EST:     GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: gi|149205694|gb|ES701290.1|ES701290
EST:     GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: gi|148967069|gb|EE018230.2|EE018230
EST:     GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: gi|148972877|gb|EE023879.2|EE023879
EST:     GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: gi|74233576|gb|DT641490.1|DT641490
EST:     GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: gi|148959617|gb|EE010908.2|EE010908
EST:     GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: gi|71306820|gb|DR789567.1|DR789567
EST:     GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: gi|33466391|gb|CF243440.1|CF243440
EST:     GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: gi|93017598|gb|EB643118.1|EB643118
EST:     GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: gi|148950563|gb|EC896143.2|EC896143
EST:     GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: gi|71303236|gb|DR787720.1|DR787720
EST:     GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: gi|71300889|gb|DR786474.1|DR786474
EST:     GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: gi|148972876|gb|EE023878.2|EE023878
EST:     GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: gi|149012053|gb|EE042471.2|EE042471
EST:     GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: gi|148935711|gb|EC879754.2|EC879754
EST:     GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: gi|148963689|gb|EE014753.2|EE014753
EST:     GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: gi|71303565|gb|DR787892.1|DR787892
EST:     GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: gi|71430039|gb|DR811089.1|DR811089
EST:     GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgctggagctccttaactgcgagtgggtctgtctgacactggagctcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT
                              gtctgac  putative branch site (score: 3)
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgcacgcacggacggacgctggagctccttaactgcgagtgggtctgtctgacactggagctcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA