Sequence
atgc intronic sequence ATGC exonic sequence...cataaataaagattgtggcattttcatgatgttattataacttcttggatgttgttgctgttgggatctattcttgaatttgtcccttcaatatatgcagGACAAGCAGGCCATAAAACAAACTTTGGAAGAAGAAGCTAGGAGATGCCAGTGGCTGGTGCTATGGCTTGATTGTGATAGAGAGGGTGAGAACATAGCAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G470438_T06 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g06900.1 (Oryza sativa), 3'ss of exon 1
---cataaataaagattgtggcattttcatgatgttattataacttcttggatgttgttgctgttgggatctattcttgaatttgtcccttcaat-atatgcagGACAAGCAGGCCATAAAACAAACTTTGGAAGAAGAAGCTAGGAGATGCCAGTGGCTGGTGCTATGGCTTGATTGTGATAGAGAGGGTGAGAACATAGCAT
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tgatgctagtggt-atggtctgatggtaatgaagttataattactgctccagtttctttttttttcagctgaggtat---attcatttttttaattaattgcagGATAAGCAAGACATAAAAAGAACATTGGAAGAGGAAGCCAGGAAGTGTCAGTGGCTTGTGCTTTGGCTTGATTGTGATAGAGAGGGTGAGAATATCGCAT
upper sequence: GRMZM2G470438_T06 (Zea mays), 3'ss of exon 1
lower sequence: AT5G63920.1 (Arabidopsis thaliana), 3'ss of exon 1
--cataaataaagattgtggcattttcatgatgttattataacttcttggatgttgttgctgttgggatctattcttgaatttgtcccttcaatatatgcagGACAAGCAGGCCATAAAACAAACTTTGGAAGAAGAAGCTAGGAGATGCCAGTGGCTGGTGCTATGGCTTGATTGTGATAGAGAGGGTGAGAACATAGCAT
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actgtataaaacgggactaggatctttgattcgcctttataatgaagttggggtt-ttctgacttgcaagttttatttaattctggtgttgagtgaat-tagGACAAAAAGGATATTAAGAAGACATTGGAGGAGGAGGCAAGGAAAAGCGACTGGCTTGTGCTGTGGCTTGATTGTGATAGGGAAGGTGAAAACATTGCAT
upper sequence: GRMZM2G470438_T06 (Zea mays), 3'ss of exon 1
lower sequence: PP1S475_4V6.1 (Physcomitrella patens), 3'ss of exon 1
-cataaataaagattgtggcattttcatgatgttatta--taacttcttgg-atgttgttgctgttgggatctattcttgaatttgtcccttcaatatatgcagGACAAGCAGGCCATAAAACAAACTTTGGAAGAAGAAGCTAGGAGATGCCAGTGGCTGGTGCTATGGCTTGATTGTGATAGAGAGGGTGAGAACATAGCAT
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ttacagctcttaattg----attactataatgtaaaagactagtttaaaaacatggtgcgacacgtactaggtattatgtaattgatgttacatcggtatgcagGATAAAGTGAATTTGCAGAAGACTTTAGAAGAAGAAGCTCGGCATTGTCAATGGCTCGTGCTATGGCTAGATTGTGATCGGGAGGGTGAGAATATCGCGTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|74232228|gb|DT640142.1|DT640142EST: GCGACCCCGCCGAACTTTTCCACGCCCCAGTCCGCAAGTCCGTGCCCCAG GACAAGCAGGCCATAAAACAAACTTTGGAAGAAGAAGCTAGGAGATGCCAG
genomic: GCGACCCCGCCGAACTTTTCCACGCCCCAGTCCGCAAGTCCGTGCCCCAGgtacactgct ... atatatgcagGACAAGCAGGCCATAAAACAAACTTTGGAAGAAGAAGCTAGGAGATGCCAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tggatgttgttgctgttgggatctattcttgaatttgtcccttcaatatatgcagGACAAGCAGGCCATAAAACAAACTTTGGAAGAAGAAGCTAGGAGATGCCAGTGGCTGGTGCTATGGCTTGATTGTGATAGAGAGGGTGAGAACATAGCAT
ttcaatatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cataaataaagattgtggcattttcatgatgttattataacttcttggatgttgttgctgttgggatctattcttgaatttgtcccttcaatatatgcagGACAAGCAGGCCATAAAACAAACTTTGGAAGAAGAAGCTAGGAGATGCCAGTGGCTGGTGCTATGGCTTGATTGTGATAGAGAGGGTGAGAACATAGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG