1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gggggcaatattttcggggccctgggcggccactcggctcgaccccccacaggtacggccctgtcttaattctgttaacttagtgctttattttttccagGTGGATACAATTCTTGACAAAGAAAATTTTACATTGGAAGAACTTCTTGACGAGGATGAAATTATTCAGGAGTGCAAAGCACTTAACTCACGACTCATAA
species | Zea mays |
transcript | GRMZM2G470292_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGCCGCCGCCATGTTCTGGCGCATGACCGGCCTCTCCGCGGCCTCGCCC GTGGATACAATTCTTGACAAAGAAAATTTTACATTGGAAGAACTTCTTGACEST: gi|71304930|gb|DR788597.1|DR788597
genomic: CCGCCGCCGCCATGTTCTGGCGCATGACCGGCCTCTCCGCGGCCTCGCCCgtgagttccc ... ttttttccagGTGGATACAATTCTTGACAAAGAAAATTTTACATTGGAAGAACTTCTTGAC
EST: CCGCCGCCGCCATGTTCTGGCGCATGACCGGCCTCTCCGCGGCCTCGCCC GTGGATACAATTCTTGACAAAGAAAATTTTACATTGGAAGAACTTCTTGAC
genomic: CCGCCGCCGCCATGTTCTGGCGCATGACCGGCCTCTCCGCGGCCTCGCCCgtgagttccc ... ttttttccagGTGGATACAATTCTTGACAAAGAAAATTTTACATTGGAAGAACTTCTTGAC
cccacaggtacggccctgtcttaattctgttaacttagtgctttattttttccagGTGGATACAATTCTTGACAAAGAAAATTTTACATTGGAAGAACTTCTTGACGAGGATGAAATTATTCAGGAGTGCAAAGCACTTAACTCACGACTCATAA
tgttaac putative branch site (score: 47)
tgctttattttttcc putative PPT
tttatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggggcaatattttcggggccctgggcggccactcggctcgaccccccacaggtacggccctgtcttaattctgttaacttagtgctttattttttccagGTGGATACAATTCTTGACAAAGAAAATTTTACATTGGAAGAACTTCTTGACGAGGATGAAATTATTCAGGAGTGCAAAGCACTTAACTCACGACTCATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - -ggccctg
- - - - - - - - - - - - -gcggcca
- - - - - - - - - - - - - - - - - - - - - -cccccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgcttt