1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttccaaaattcaaaccataatccgttgcttaaatagttaatggtccctgtcttgcttacctcagcgtcaggattgtctcaaatggtgtaacctattgtagGGAATGCCATGCCTAGGTATCAAGTGGGCTTGACAAAGGATGATTCAAGTAGTAGACACTCTGAGTGGCGGCAGCCTAGCACAGATGATGTGCGCAAGAG
species | Zea mays |
transcript | GRMZM2G469469_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCTCGATAGCCGTGACGCCGCCGCCTCGTCCTCCGACCACTGGCCCGGTG BGAATGCCATGCCTAGGTATCAAGTGGGCTTGACWAAKGATGATTCAMGTAEST: gi|211009308|gb|FL189707.1|FL189707
genomic: GCTCGATAGCCGTGACGCCGCCGCCTCGTCCTCCGACCACTGGCCCGGTGgtgagctcga ... cctattgtagGGAATGCCATGCCTAGGTATCAAGTGGGCTTGACAAAGGATGATTCAAGTA
EST: GCTCGATAGCCGTGACGCCGCCGCCTCGTCCTCCGACCACTGGCCCGGTG GGAATGCCATGCCTAGGTATCAAGTGGGCTTGACAAAGGATGATTCAAGTAEST: gi|211009304|gb|FL189703.1|FL189703
genomic: GCTCGATAGCCGTGACGCCGCCGCCTCGTCCTCCGACCACTGGCCCGGTGgtgagctcga ... cctattgtagGGAATGCCATGCCTAGGTATCAAGTGGGCTTGACAAAGGATGATTCAAGTA
EST: GCTCGATAGCCGTGACGCCGCCGCCTCGTCCTCCGACCACTGGCCCGGTG GGAATGCCATGCCTAGGTATCAAGTGGGCTTGACAAAGGATGATTCAAGTAEST: gi|211009303|gb|FL189702.1|FL189702
genomic: GCTCGATAGCCGTGACGCCGCCGCCTCGTCCTCCGACCACTGGCCCGGTGgtgagctcga ... cctattgtagGGAATGCCATGCCTAGGTATCAAGTGGGCTTGACAAAGGATGATTCAAGTA
EST: GCTCGATAGCCGTGACGCCGCCGCCTCGTCCTCCGACCACTGGCCCGGTG GGAATGCCATGCCTAGGTATCAAGTGGGCTTGACAAAGGATGATTCAAGTA
genomic: GCTCGATAGCCGTGACGCCGCCGCCTCGTCCTCCGACCACTGGCCCGGTGgtgagctcga ... cctattgtagGGAATGCCATGCCTAGGTATCAAGTGGGCTTGACAAAGGATGATTCAAGTA
cctgtcttgcttacctcagcgtcaggattgtctcaaatggtgtaacctattgtagGGAATGCCATGCCTAGGTATCAAGTGGGCTTGACAAAGGATGATTCAAGTAGTAGACACTCTGAGTGGCGGCAGCCTAGCACAGATGATGTGCGCAAGAG
tattgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttccaaaattcaaaccataatccgttgcttaaatagttaatggtccctgtcttgcttacctcagcgtcaggattgtctcaaatggtgtaacctattgtagGGAATGCCATGCCTAGGTATCAAGTGGGCTTGACAAAGGATGATTCAAGTAGTAGACACTCTGAGTGGCGGCAGCCTAGCACAGATGATGTGCGCAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - caaacca
- - - - - - - - - - - - -tgcttaa