1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttttcgatcgatctagttctagtttgcgtgtctgaatttttcctttgcaaaattactctcaaatgtagatctgccttatcttgttaattgttttttgcagGGCACCTTGCCATTTAGGCTACTGGCTGCTGAATATGGTGCTGATATTACTTATGGAGAAGAAATTATTGATCACAAATTCTTGAAGTGTGAGCGTGTTA
species | Zea mays |
transcript | GRMZM2G468693_T05 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGGGGATGGAGTACCGCGACAAGCTCGTGCTGGCGCCCATGGTCCGCGTG GGCACCTTGCCATTTAGGCTACTGGCTGCTGAATATGGTGCTGATATTACTEST: gi|211460993|gb|FL255146.1|FL255146
genomic: TGGGGATGGAGTACCGCGACAAGCTCGTGCTGGCGCCCATGGTCCGCGTGgtaactcctc ... ttttttgcagGGCACCTTGCCATTTAGGCTACTGGCTGCTGAATATGGTGCTGATATTACT
EST: TGGGGATGGAGTACCACGACAAGCTGGTGCTGGCGCCCATGGTCCGCGTG GGCACCTTGCCATTTAGGCTACTGGCTGCTGAATATGGTGCTGATATTACTEST: gi|74237927|gb|DT645841.1|DT645841
genomic: TGGGGATGGAGTACCGCGACAAGCTCGTGCTGGCGCCCATGGTCCGCGTGgtaactcctc ... ttttttgcagGGCACCTTGCCATTTAGGCTACTGGCTGCTGAATATGGTGCTGATATTACT
EST: TGGGGATGGAGTACCGCGACAAGCTCGTGCTGGCGCCCATGGTCCGCGTG GGCACCTTGCCATTTAGGCTACTGGCTGCTGAATATGGTGCTGATATTACTEST: gi|76015755|gb|DT942925.1|DT942925
genomic: TGGGGATGGAGTACCGCGACAAGCTCGTGCTGGCGCCCATGGTCCGCGTGgtaactcctc ... ttttttgcagGGCACCTTGCCATTTAGGCTACTGGCTGCTGAATATGGTGCTGATATTACT
EST: TGGGGATGGAGTACCGCGACAAGCTCGTGCTGGCGCCCATGGTCCGCGTG GGCACCTTGCCATTTAGGCTACTGGCTGCTGAATATGGTGCTGATATTACTEST: gi|89762291|gb|DY689959.1|DY689959
genomic: TGGGGATGGAGTACCGCGACAAGCTCGTGCTGGCGCCCATGGTCCGCGTGgtaactcctc ... ttttttgcagGGCACCTTGCCATTTAGGCTACTGGCTGCTGAATATGGTGCTGATATTACT
EST: TGGGGATGGAGTACCGCGACAAGCTCGTGCTGGCGCCCATGGTCCGCGTG GGCACCTTGCCATTTAGGCTACTGGCTGCTGAATATGGTGCTGATATTACT
genomic: TGGGGATGGAGTACCGCGACAAGCTCGTGCTGGCGCCCATGGTCCGCGTGgtaactcctc ... ttttttgcagGGCACCTTGCCATTTAGGCTACTGGCTGCTGAATATGGTGCTGATATTACT
tgcaaaattactctcaaatgtagatctgccttatcttgttaattgttttttgcagGGCACCTTGCCATTTAGGCTACTGGCTGCTGAATATGGTGCTGATATTACTTATGGAGAAGAAATTATTGATCACAAATTCTTGAAGTGTGAGCGTGTTA
tgttaat putative branch site (score: 76)
ttgtttttt CT-rich tract
ttatcttgttaattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttcgatcgatctagttctagtttgcgtgtctgaatttttcctttgcaaaattactctcaaatgtagatctgccttatcttgttaattgttttttgcagGGCACCTTGCCATTTAGGCTACTGGCTGCTGAATATGGTGCTGATATTACTTATGGAGAAGAAATTATTGATCACAAATTCTTGAAGTGTGAGCGTGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG