Sequence
atgc intronic sequence ATGC exonic sequence...atgcataacagctgatggcaattgtgatctccttcttcatgaaatgttattttctctgatggacacataaattgacctcccactttgtaattcaatgcagAAGATGGAGTTTGACGAGACAACATAATCCTCTGGCTGGACTCTACACCATGGCCCATGGATTAACAAACCTTCTCATATGACATTCTGAAAATACAGAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G468260_T04 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os11g41140.1 (Oryza sativa), 3'ss of exon 4
atgcataacagctgatggcaattgtgatctccttcttcatgaaatgttattttctctgatggacacataaattgacctcccactttgtaattcaatgcagAAGATGGAGTTTGACGAGACAACATAATCCTCTGGCTGGACTCTACACCATGGCCCATGGATTAACAAACCTTCTCATATGACATTCTGAAAATACAGAT------------
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atagctgacagctgtcggaatctattttgtttctcctttccaaacgatgttttccttctaactcttgattgatgttttgctttcttctaatcctccgcagAAAATGGAGTTTGACGAGACAACATAATTGTCAGACTGGCCTGTAT-------TTCTTGGATTAACAACCCTC-----ATGGCAATCTGAAAGTACAGGTGGTCTAGGCCACMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211285705|gb|FL480404.1|FL480404EST: GTATTTATGAGTGGATGGAAAGAAGTGAAGCATGCCCTGTCTGTGGAAAG AAGATGGAGTTTGACGAGACAACATAATCCTCTGGCTGGACTCTACACCAT
genomic: GTATTTATGAGTGGATGGAAAGAAGTGAGGCATGCCCTGTCTGTGGAAAGgtaatttgtt ... ttcaatgcagAAGATGGAGTTTGACGAGACAACATAATCCTCTGGCTGGACTCTACACCAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttattttctctgatggacacataaattgacctcccactttgtaattcaatgcagAAGATGGAGTTTGACGAGACAACATAATCCTCTGGCTGGACTCTACACCATGGCCCATGGATTAACAAACCTTCTCATATGACATTCTGAAAATACAGAT
aattgac putative branch site (score: 3)
acataaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atgcataacagctgatggcaattgtgatctccttcttcatgaaatgttattttctctgatggacacataaattgacctcccactttgtaattcaatgcagAAGATGGAGTTTGACGAGACAACATAATCCTCTGGCTGGACTCTACACCATGGCCCATGGATTAACAAACCTTCTCATATGACATTCTGAAAATACAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA