1 5' 3' | 2 5' 3' | 3 5' 3' |
...tatatactgatataaactgtggttatgaattaatagctgatttaatttgagacaatacagatggaaatggttgcatattaatcttctcttttgtttttagTATACTGTTTTGTTCCGAGCTGGAGCAGTGCATTCTGTTTCCCCCGCTATTGAAGCCACTCCTGTTGATTCAACTGAAAGCTCCTTCGATACATATCGTT
species | Zea mays |
transcript | GRMZM2G468260_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TAGGAACTGCATGTGCCTCAGATGCTTTACCCAGCAGCTGATCAATGCG TATACTGTTTTGTTCCGAGCTGGAGCAGTGCATTCTGTTTCCCCCGCTATTEST: gi|78178991|gb|DV549364.1|DV549364
genomic: TAGGAACTGCATGTGCCTCAGATGCTTTACCCAGCAGCTGATCAATGCGgtatgttctc ... ttgtttttagTATACTGTTTTGTTCCGAGCTGGAGCAGTGCATTCTGTTTCCCCCGCTATT
EST: TTAGGAACTGCATGTGCCTCAGATGCTTTACCCAGCAGCTGATCAATGCG TATACTGTTTTGTTCCGAGCTGGAGCAGTGCATTCTGTTTCCCCCGCTATTEST: gi|22490036|gb|BU049959.1|BU049959
genomic: TTAGGAACTGCATGTGCCTCAGATGCTTTACCCAGCAGCTGATCAATGCGgtatgttctc ... ttgtttttagTATACTGTTTTGTTCCGAGCTGGAGCAGTGCATTCTGTTTCCCCCGCTATT
EST: TTAGGAACTGCATGTGCCTCAGATGCTTTACCCAGCAGCTGATCAATGCG TATACTGTTTTGTTCCGAGCTGGAGCAGTGCATTCTGTTTCCCCCGCTATTEST: gi|211131422|gb|FK982405.1|FK982405
genomic: TTAGGAACTGCATGTGCCTCAGATGCTTTACCCAGCAGCTGATCAATGCGgtatgttctc ... ttgtttttagTATACTGTTTTGTTCCGAGCTGGAGCAGTGCATTCTGTTTCCCCCGCTATT
EST: TTAGGAACTGCATGTGCCTCAGATGCTTTACCCAGCAGCTGATCAATGCG TATACTGTTTTGTTCCGAGCTGGAGCAGTGCATTCTGTTTCCCCCGCTATTEST: gi|7844561|gb|AW787783.1|AW787783
genomic: TTAGGAACTGCATGTGCCTCAGATGCTTTACCCAGCAGCTGATCAATGCGgtatgttctc ... ttgtttttagTATACTGTTTTGTTCCGAGCTGGAGCAGTGCATTCTGTTTCCCCCGCTATT
EST: CTGCATGTGCCTCAGATGCTTTACCCAGCAGCTGATCAATGCG TATACTGTTTTGTTCCGAGCTGGAGCAGTGCATTCTGTTTCCCCCGCTATTEST: gi|18655076|gb|BM499881.1|BM499881
genomic: CTGCATGTGCCTCAGATGCTTTACCCAGCAGCTGATCAATGCGgtatgttctc ... ttgtttttagTATACTGTTTTGTTCCGAGCTGGAGCAGTGCATTCTGTTTCCCCCGCTATT
EST: TTAGGAACTGCATGTGCCTCAGATGCTTTACCCAGCAGCTGATCAATGCG TATACTGNTTTGTTCCGAGCTGGAGCAGTGCATTCTGTTTCCCCCGCTATTEST: gi|87151834|gb|DY396623.1|DY396623
genomic: TTAGGAACTGCATGTGCCTCAGATGCTTTACCCAGCAGCTGATCAATGCGgtatgttctc ... ttgtttttagTATACTGTTTTGTTCCGAGCTGGAGCAGTGCATTCTGTTTCCCCCGCTATT
EST: TTAGGAACTGCATGTGCCTCAGATGCTTTACCCAGCAGCTGATCAATGCG TATACTGTTTTGTTCCGAGCTGGAGCAGTGCATTCTGTTTCCCCCGCTATT
genomic: TTAGGAACTGCATGTGCCTCAGATGCTTTACCCAGCAGCTGATCAATGCGgtatgttctc ... ttgtttttagTATACTGTTTTGTTCCGAGCTGGAGCAGTGCATTCTGTTTCCCCCGCTATT
tttgagacaatacagatggaaatggttgcatattaatcttctcttttgtttttagTATACTGTTTTGTTCCGAGCTGGAGCAGTGCATTCTGTTTCCCCCGCTATTGAAGCCACTCCTGTTGATTCAACTGAAAGCTCCTTCGATACATATCGTT
tattaat putative branch site (score: 139)
ttaatcttctcttttg CT-rich tract
atattaatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatatactgatataaactgtggttatgaattaatagctgatttaatttgagacaatacagatggaaatggttgcatattaatcttctcttttgtttttagTATACTGTTTTGTTCCGAGCTGGAGCAGTGCATTCTGTTTCCCCCGCTATTGAAGCCACTCCTGTTGATTCAACTGAAAGCTCCTTCGATACATATCGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - tactgat
- - - - - - - - - - - - - - - - - -gctgatt
- - - - - - - - - - - - - - - - - - - - - - - - - -acaataca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggttgc