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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acatcaagctgtcgcttctttttcctagatatccgcgccgagtgctaacattatctttttattcattgtcttggttgactgatactgggatgatctgcagACCGAACATG

Basic information

species Zea mays
transcript GRMZM2G466281_T01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211250318|gb|FL201841.1|FL201841
EST:     TCCAGCCCTTCTGGTCCCGATTCGTCAACATCTTCCCGCTATGGTTTSCC                         ACCGAACATG
genomic: TCCAGCCCTTCTGGTCCCGATTCGTCAACATCTTCCCGCTATGGTTC-CCgtaagccgcc ... tgatctgcagACCGAACATG
EST: gi|101388019|gb|EB816024.1|EB816024
EST:     CTCCAGCCCTTCTGGTCCCGATTCGTCAACATCTTCCCGCTATGGTTCCC                         ACCGAACATG
genomic: CTCCAGCCCTTCTGGTCCCGATTCGTCAACATCTTCCCGCTATGGTTCCCgtaagccgcc ... tgatctgcagACCGAACATG
EST: gi|76933447|gb|DV173462.1|DV173462
EST:     CTCCAGCCCTTCTGGTCCCGATTCGTCAACATCTTCCCGCTATGGTTCCC                         ACCGAACATG
genomic: CTCCAGCCCTTCTGGTCCCGATTCGTCAACATCTTCCCGCTATGGTTCCCgtaagccgcc ... tgatctgcagACCGAACATG
EST: gi|78108358|gb|DV526776.1|DV526776
EST:     CTCCAGCCCTTCTGGTCCCGATTCGTCAACATCTTCCCGCTATGGTTCCC                         ACCGAACATG
genomic: CTCCAGCCCTTCTGGTCCCGATTCGTCAACATCTTCCCGCTATGGTTCCCgtaagccgcc ... tgatctgcagACCGAACATG
EST: gi|76284393|gb|DV023961.1|DV023961
EST:     CTCCAGCCCTTCTGGTCCCGATTCGTCAACATCTTCCCGCTATGGTTCCC                         ACCGAACATG
genomic: CTCCAGCCCTTCTGGTCCCGATTCGTCAACATCTTCCCGCTATGGTTCCCgtaagccgcc ... tgatctgcagACCGAACATG
EST: gi|211250321|gb|FL201844.1|FL201844
EST:     CTCCAGCCCTTCTGGTCCCGATTCGTCAACATCTTCCCGCTATGGTTCCC                         ACCGAACATG
genomic: CTCCAGCCCTTCTGGTCCCGATTCGTCAACATCTTCCCGCTATGGTTCCCgtaagccgcc ... tgatctgcagACCGAACATG
EST: gi|211250315|gb|FL201838.1|FL201838
EST:     CTCCAGCCCTTCTGGTCCCGATTCGTCAACATCTTCCCGCTATGGTTCCC                         ACCGAACATG
genomic: CTCCAGCCCTTCTGGTCCCGATTCGTCAACATCTTCCCGCTATGGTTCCCgtaagccgcc ... tgatctgcagACCGAACATG
EST: gi|148930548|gb|EE285169.2|EE285169
EST:     CTCCAGCCCTTCTGGTCCCGATTCGTCAACATCTTCCCGCTATGGTTCCC                         ACCGAACATG
genomic: CTCCAGCCCTTCTGGTCCCGATTCGTCAACATCTTCCCGCTATGGTTCCCgtaagccgcc ... tgatctgcagACCGAACATG
EST: gi|148948015|gb|EC893516.2|EC893516
EST:     CTCCAGCCCTTCTGGTCCCGATTCGTCAACATCTTCCCGCTATGGTTCCC                         ACCGAACATG
genomic: CTCCAGCCCTTCTGGTCCCGATTCGTCAACATCTTCCCGCTATGGTTCCCgtaagccgcc ... tgatctgcagACCGAACATG
EST: gi|149095953|gb|EE181619.2|EE181619
EST:     CTCCAGGCCTTCTGGTCCCGATTCGACAACATCTTCCCGCTACGCTTCCC                         ACCGAACATG
genomic: CTCCAGCCCTTCTGGTCCCGATTCGTCAACATCTTCCCGCTATGGTTCCCgtaagccgcc ... tgatctgcagACCGAACATG
EST: gi|211250319|gb|FL201842.1|FL201842
EST:     CTCCAGCCCTTCTGGTCCCGATTCGTCAACATCTTCCCGCTATGGTTCCC                         ACCGAACATG
genomic: CTCCAGCCCTTCTGGTCCCGATTCGTCAACATCTTCCCGCTATGGTTCCCgtaagccgcc ... tgatctgcagACCGAACATG
EST: gi|149085392|gb|EE174899.2|EE174899
EST:     CTCCAGCCCTTCTGGTCCCGATTCGTCAACATCTTCCCGCTATGGTTCCC                         ACCGAACATG
genomic: CTCCAGCCCTTCTGGTCCCGATTCGTCAACATCTTCCCGCTATGGTTCCCgtaagccgcc ... tgatctgcagACCGAACATG
EST: gi|88756189|gb|DY540330.1|DY540330
EST:     CTCCAGCCCTTCTGGTCCCGATTCGTCAACATCTTCCCGCTATGGTTCCC                         ACCGAACATG
genomic: CTCCAGCCCTTCTGGTCCCGATTCGTCAACATCTTCCCGCTATGGTTCCCgtaagccgcc ... tgatctgcagACCGAACATG
EST: gi|211250320|gb|FL201843.1|FL201843
EST:     CTCCAGCCCTTCTGGTCCCGATTCGTCAACATCTTCCCGCTATGGTTTCC                         ACNNAACATG
genomic: CTCCAGCCCTTCTGGTCCCGATTCGTCAACATCTTCCCGCTATGGTTCCCgtaagccgcc ... tgatctgcagACCGAACATG
EST: gi|88756155|gb|DY540296.1|DY540296
EST:     CTCCAGCCCTTCTGGTCCCGATTCGTCAACATCTTCCCGCTATGGTTCCC                         ACCGAACATG
genomic: CTCCAGCCCTTCTGGTCCCGATTCGTCAACATCTTCCCGCTATGGTTCCCgtaagccgcc ... tgatctgcagACCGAACATG
EST: gi|211250316|gb|FL201839.1|FL201839
EST:     CTCCAGCCCTTCTGGTCCCGATTCGTCAACATCTTCCCGCTATGGTKNCC                         ACCGAACATG
genomic: CTCCAGCCCTTCTGGTCCCGATTCGTCAACATCTTCCCGCTATGGTTCCCgtaagccgcc ... tgatctgcagACCGAACATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taacattatctttttattcattgtcttggttgactgatactgggatgatctgcagACCGAACATG
     ttatctttttattcat  TA-rich tract