Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211467326|gb|FK982254.1|FK982254EST: GGGGCCTCCGCCTCAACTACACCGAGGCCGTCGCGCTCATCGCCGCGCAG ATTCTTGAGCTTATTCGCGATGGAGACAAAACCGTGACAGACCTCATGGAC
genomic: GGGGCCTCCGCCTCAACTACACCGAGGCCGTCGCGCTCATCGCCGCGCAGgtcagccccc ... gatgatacagATTCTTGAGCTTATTCGCGATGGAGACAAAACCGTGACAGACCTCATGGAC
EST:
gi|161589667|gb|EY961389.1|EY961389EST: GGGGCCTCCGCCTCAACTACACCGAGGCCGTCGCGCTCATCGCCGCGCAG ATTCTTGAGCTTATTACGCGATGGAGACAAAACCGTGACAGA
genomic: GGGGCCTCCGCCTCAACTACACCGAGGCCGTCGCGCTCATCGCCGCGCAGgtcagccccc ... gatgatacagATTCTTGAGCTTATT-CGCGATGGAGACAAAACCGTGACAGA
EST:
gi|211090508|gb|FK961025.1|FK961025EST: GGGGCCTCCGCCTCAACTACACCGAGGCCGTCGCGCTCATCGCCGCGCAG ATTCTTGAGCTTATTCGCGATGGAGACAAAACCGTGACAGACCTCATGGAC
genomic: GGGGCCTCCGCCTCAACTACACCGAGGCCGTCGCGCTCATCGCCGCGCAGgtcagccccc ... gatgatacagATTCTTGAGCTTATTCGCGATGGAGACAAAACCGTGACAGACCTCATGGAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atttggtttggctggcatggctgaactaagtctacctctctccctgatgatacagATTCTTGAGCTTATTCGCGATGGAGACAAAACCGTGACAGACCTCATGGACCTGGGGAAACAACTATTGGGCAG
ccctgat putative branch site (score: 4)
tctacctctctccctg CT-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttcctgattttgctcgcctggaggccactttgctttgttggcatatttggtttggctggcatggctgaactaagtctacctctctccctgatgatacagATTCTTGAGCTTATTCGCGATGGAGACAAAACCGTGACAGACCTCATGGACCTGGGGAAACAACTATTGGGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA