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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactacccactgactcgcctctccttcgtttcaccttatcgtgcagtccggcgcggaaaatttcccggtttcctgatgcgtatgccgtttgttgctccagGTGGAACTGGCCGCTCTCCTGCACGACGTTG

Basic information

species Zea mays
transcript GRMZM2G459291_T01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60348894|gb|DN215867.1|DN215867
EST:     TCTCGCTCGCAGCCGAAGAGGGCCTCTCCGCTCCCGACCGCCTCCTCACC                         GTGGAACTGGCCGCTCTCCTGCACGACGTTG
genomic: TCTCGCTCGCAGCCGAAGAGGGCCTCTCCGCTCCCGACCGCCTCCTCACCgtaactaccc ... gttgctccagGTGGAACTGGCCGCTCTCCTGCACGACGTTG
EST: gi|74239921|gb|DT647835.1|DT647835
EST:     TCTCGCTCGCAGCCGAAGAGGGCCTCTCCGCTCCCGACCGCCTCCTCACC                         GTGGAACTGGCCGCTCTCCTGCACGACGTTGGAG
genomic: TCTCGCTCGCAGCCGAAGAGGGCCTCTCCGCTCCCGACCGCCTCCTCACCgtaactaccc ... gttgctccagGTGGAACTGGCCGCTCTCCTGCACGACGTT---G
EST: gi|76018399|gb|DT945569.1|DT945569
EST:     TCTCGCTCGCAGCCGAAGAGGGCCTCTCCGCTCCCGACCGCCTCCTCACC                         GTGGAACTGGCCGCTCTCCTGCACGACGTTGGAG
genomic: TCTCGCTCGCAGCCGAAGAGGGCCTCTCCGCTCCCGACCGCCTCCTCACCgtaactaccc ... gttgctccagGTGGAACTGGCCGCTCTCCTGCACGACGTT---G
EST: gi|148945620|gb|EC890877.2|EC890877
EST:     TCTCGCTCGCAGCCGAAGAGGGCCTCTCCGCTCCCGACCGCCTCCTCACC                         GTGGAACTGGCCGCTCTCCTGCACGACGTTG
genomic: TCTCGCTCGCAGCCGAAGAGGGCCTCTCCGCTCCCGACCGCCTCCTCACCgtaactaccc ... gttgctccagGTGGAACTGGCCGCTCTCCTGCACGACGTTG
EST: gi|211541590|gb|FL022793.1|FL022793
EST:     TCTCGCTCGCAGCCGAAGAGGGCCTCTCCGCTCCCGACCGCCTCCTCACC                         GTGGAACTGGCCGCTCTCCTGCACGACGTTGGAG
genomic: TCTCGCTCGCAGCCGAAGAGGGCCTCTCCGCTCCCGACCGCCTCCTCACCgtaactaccc ... gttgctccagGTGGAACTGGCCGCTCTCCTGCACGACGTT---G


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtccggcgcggaaaatttcccggtttcctgatgcgtatgccgtttgttgctccagGTGGAACTGGCCGCTCTCCTGCACGACGTTG
                         tcctgat  putative branch site (score: 3)
                                              ttgctcc  putative PPT
           aaaattt  TA-rich tract