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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gacctgaaatactttgtttctgcatctagcttaatacagcatgcagctctttggaatagctagcaacacggccactgataccatatcccgcttccttcagGTGAATCTGCAAATGTAGGATGGTCAGCTGATCCTTCTGTCCACACCAACTATAGCGCCGGGAGCCCCAGGCTGAAACAATGCTTGTCTGATATCAGCAT

Basic information

species Zea mays
transcript GRMZM2G458548_T02
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6626306|gb|AW257838.1|AW257838
EST:     TGGTTACAGAGCTGGTCTCATGTCGCCTTTTTCTTCGCAGCAACCTTCGG                         GTGAATCTGCAAATGTAGGATGGTCAGCTGATCCTTCTGTCCACACCAACT
genomic: TGGTTACAGAGCTGGTCTCATGTCGCCTTTTTCTTCGCAGCAACCTTCGGgtattttgtt ... cttccttcagGTGAATCTGCAAATGTAGGATGGTCAGCTGATCCTTCTGTCCACACCAACT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctctttggaatagctagcaacacggccactgataccatatcccgcttccttcagGTGAATCTGCAAATGTAGGATGGTCAGCTGATCCTTCTGTCCACACCAACTATAGCGCCGGGAGCCCCAGGCTGAAACAATGCTTGTCTGATATCAGCAT
                           cactgat  putative branch site (score: 3)
                                      tatcccgcttccttc  putative PPT