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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cacgcataggcatagacacgtccttgaattagtgtgatgatttactgttccgctgtgttggttcatttgcttggccttcacttgcggtgtgttgttgcagGGGATGTCATTCTCAATCAGGAACCTTACGCTTCTACACCTAACAAGATTTTAGTTGGATCGAGCTGTGACCATTGTTTCACCTCTGGCAACCTGAGGAA

Basic information

species Zea mays
transcript GRMZM2G457881_T03
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G457881_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g49730.3 (Oryza sativa), 3'ss of exon 1
cacgcataggcatag-acacgtccttgaattagtgtgatgatttactgttccgctgtgttggttcat-ttgcttggccttcacttgcggtgtgttgt-----tgcagGGGATGTCATTCTCAATCAGGAACCTTACGCTTCTACACCTAACAAGATTTTAGTTGGATCGAGCTGTGACCATTGTTTCACCTCTGGCAACCTGAGGAA
 | ||  |  | |||   | |    ||    | || | |  || | ||    |   |  |||||| | ||||   |       |   || | ||| |     |||||| || ||| || |    || || ||||||||||||||||| ||||||||||  || || || | ||| ||| |||||||| ||||  | |||||||||||
-aggc-catccgtagtggatgctgctg---caatgcggt--ttcattgagttgggattatggttcctgttgccgcgatgatgatgatggggggttctgcgtctgcagGAGAAGTCGTTATTTCGCAAGAGCCTTACGCTTCTACACCAAACAAGATTTCTGTGGGCTCCAACTGCGACAATTGTTTCGCCTCCAGAAACCTGAGGAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211471995|gb|FK962992.1|FK962992
EST:     CATCCCCGGCAAGGGAAGGGGTCTCATCGCTACTCGCACCTTCTTCCCAG                         GGGATGTCATTCTCAATCAGGAACCTTACGCTTCTACACCTAACAAGATTT
genomic: CATCCCCGGCAAGGGAAGGGGTCTCATCGCTACTTGCACCTTCTTCCCAGgtgaaaccgc ... gttgttgcagGGGATGTCATTCTCAATCAGGAACCTTACGCTTCTACACCTAACAAGATTT
EST: gi|211474518|gb|FK963007.1|FK963007
EST:     CATCCCCGGCAAGGGAAGGGGTCTCATCGCTACTTTCACCTTCTTCCCAG                         GGGATGTCATTCTCAATCAGGAACCTTACGCTTCTACACCTAACAAGATTT
genomic: CATCCCCGGCAAGGGAAGGGGTCTCATCGCTACTTGCACCTTCTTCCCAGgtgaaaccgc ... gttgttgcagGGGATGTCATTCTCAATCAGGAACCTTACGCTTCTACACCTAACAAGATTT
EST: gi|211477029|gb|FK963011.1|FK963011
EST:     CATCCCCGGCAAGGGAAGGGGTCTCATCGCTACTTTCACCTTCTTCCCAG                         GGGATGTCATTCTCAATCAGGAACCTTACGCTTCTACACCTAACAAGATTT
genomic: CATCCCCGGCAAGGGAAGGGGTCTCATCGCTACTTGCACCTTCTTCCCAGgtgaaaccgc ... gttgttgcagGGGATGTCATTCTCAATCAGGAACCTTACGCTTCTACACCTAACAAGATTT
EST: gi|211474509|gb|FK962998.1|FK962998
EST:     CATCCCCGGCAAGGGAAGGGGTCTCATCGCTACTTTCACCTTCTTCCCAG                         GGGATGTCATTCTCAATCAGGAACCTTACGCTTCTACACCTAACAAGATTT
genomic: CATCCCCGGCAAGGGAAGGGGTCTCATCGCTACTTGCACCTTCTTCCCAGgtgaaaccgc ... gttgttgcagGGGATGTCATTCTCAATCAGGAACCTTACGCTTCTACACCTAACAAGATTT
EST: gi|211474519|gb|FK963008.1|FK963008
EST:     CATCCCCGGCAAGGGAAGGGGTCTCATCGCTACTTGCACCTTCTTCCCAG                         GGGATGTCATTCTCAATCAGGAACCTTACGCTTCTACACCTAACAAGATTT
genomic: CATCCCCGGCAAGGGAAGGGGTCTCATCGCTACTTGCACCTTCTTCCCAGgtgaaaccgc ... gttgttgcagGGGATGTCATTCTCAATCAGGAACCTTACGCTTCTACACCTAACAAGATTT
EST: gi|211474515|gb|FK963004.1|FK963004
EST:     CATCCCCGGCAAGGGAAGGGGTCTCATCGCTACTTTCACCTTCTTCCCAG                         GGGATGTCATTCTCAATCAGGAACCTTACGCTTCTACACCTAACAAGATTT
genomic: CATCCCCGGCAAGGGAAGGGGTCTCATCGCTACTTGCACCTTCTTCCCAGgtgaaaccgc ... gttgttgcagGGGATGTCATTCTCAATCAGGAACCTTACGCTTCTACACCTAACAAGATTT
EST: gi|211471996|gb|FK962993.1|FK962993
EST:     CATCCCCGGNAAGGGAAGGGGTCTCATCGCTACTCGCACCTTCTTCCCAG                         GGGATGTCATTCTCAATCAGGAACCTTACGCTTCTACACCTAACAAGATTT
genomic: CATCCCCGGCAAGGGAAGGGGTCTCATCGCTACTTGCACCTTCTTCCCAGgtgaaaccgc ... gttgttgcagGGGATGTCATTCTCAATCAGGAACCTTACGCTTCTACACCTAACAAGATTT
EST: gi|211474511|gb|FK963000.1|FK963000
EST:     CATCCCCGGCAAGGGAAGGGGTCTCATCGCTACTTTCACCTTCTTCCCAG                         GGGATGTCATTCTCAATCAGGAACCTTACGCTTCTACACCTAACAAGATTT
genomic: CATCCCCGGCAAGGGAAGGGGTCTCATCGCTACTTGCACCTTCTTCCCAGgtgaaaccgc ... gttgttgcagGGGATGTCATTCTCAATCAGGAACCTTACGCTTCTACACCTAACAAGATTT
EST: gi|211474516|gb|FK963005.1|FK963005
EST:     CATCCCCGGCAAGGGAAGGGGNCTCATCGCTACTTTCACCTTCTTCCCAG                         GGGATGTCATTCTCAATCAGGAACCTTACGCTTCTACACCTAACAAGATTT
genomic: CATCCCCGGCAAGGGAAGGGGTCTCATCGCTACTTGCACCTTCTTCCCAGgtgaaaccgc ... gttgttgcagGGGATGTCATTCTCAATCAGGAACCTTACGCTTCTACACCTAACAAGATTT
EST: gi|211474507|gb|FK962996.1|FK962996
EST:     CATCCCCGGCAAGGGAAGGGGTCTCATCGCTACTTTCACCTTCTTCCCAG                         GGGATGTCATTCTCAATCAGGAACCTTACGCTTCTACACCTAACAAGATTT
genomic: CATCCCCGGCAAGGGAAGGGGTCTCATCGCTACTTGCACCTTCTTCCCAGgtgaaaccgc ... gttgttgcagGGGATGTCATTCTCAATCAGGAACCTTACGCTTCTACACCTAACAAGATTT
EST: gi|211474508|gb|FK962997.1|FK962997
EST:     CATCCCCGGCAAGGGAAGGGGTCYCATCGCTACTTGCACCTTCTTCCCAG                         GGGATGTCATTCTCAATCAGGAACCTTACGCTTCTACACCTAACAAGATTT
genomic: CATCCCCGGCAAGGGAAGGGGTCTCATCGCTACTTGCACCTTCTTCCCAGgtgaaaccgc ... gttgttgcagGGGATGTCATTCTCAATCAGGAACCTTACGCTTCTACACCTAACAAGATTT
EST: gi|211474510|gb|FK962999.1|FK962999
EST:     CATCCCCGGCAAGGGAAGGGGTCTCATCGCTACTTTCACCTTCTTCCCAG                         GGGATGTCATTCTCAATCAGGAACCTTACGCTTCTACACCTAACAAGATTT
genomic: CATCCCCGGCAAGGGAAGGGGTCTCATCGCTACTTGCACCTTCTTCCCAGgtgaaaccgc ... gttgttgcagGGGATGTCATTCTCAATCAGGAACCTTACGCTTCTACACCTAACAAGATTT
EST: gi|211474520|gb|FK963009.1|FK963009
EST:     CATTCCCGGCAAGGGAAGGGGTCTCATCGCTACTTTCACCTTCTTCCCAG                         GGGATGTCATTCTCAATCAGGAACCTTACGCTTCTACACCTAACAAGATTT
genomic: CATCCCCGGCAAGGGAAGGGGTCTCATCGCTACTTGCACCTTCTTCCCAGgtgaaaccgc ... gttgttgcagGGGATGTCATTCTCAATCAGGAACCTTACGCTTCTACACCTAACAAGATTT
EST: gi|149023564|gb|EE045895.2|EE045895
EST:     CATCCCCGGCAAGGGAAGGGGTCTCATCGCTACTTGCACCTTCTTCCCAG                         GGGATGTCATTCTCAATCAGGAACCTTACGCTTCTACACCTAACAAGATTT
genomic: CATCCCCGGCAAGGGAAGGGGTCTCATCGCTACTTGCACCTTCTTCCCAGgtgaaaccgc ... gttgttgcagGGGATGTCATTCTCAATCAGGAACCTTACGCTTCTACACCTAACAAGATTT
EST: gi|211474517|gb|FK963006.1|FK963006
EST:     CATCCCCGGCAAGGGAAGGGGTCTCATCGCTACTTTCACCTTCTTCCCAG                         GGGATGTCATTCTCAATCAGGAACCTTACGCTTCTACACCTAACAAGATTT
genomic: CATCCCCGGCAAGGGAAGGGGTCTCATCGCTACTTGCACCTTCTTCCCAGgtgaaaccgc ... gttgttgcagGGGATGTCATTCTCAATCAGGAACCTTACGCTTCTACACCTAACAAGATTT
EST: gi|211474514|gb|FK963003.1|FK963003
EST:     CATCCCCGGCAAGGGAAGGGGTCTCATCGCTACTTTCACCTTCTTCCCAG                         GGGATGTCATTCTCAATCAGGAACCTTACGCTTCTACACCTAACAAGATTT
genomic: CATCCCCGGCAAGGGAAGGGGTCTCATCGCTACTTGCACCTTCTTCCCAGgtgaaaccgc ... gttgttgcagGGGATGTCATTCTCAATCAGGAACCTTACGCTTCTACACCTAACAAGATTT
EST: gi|211474521|gb|FK963010.1|FK963010
EST:     CATCCCCGGCAAGGGAAGGGGTCTCATCGCTACTCGCACCTTCTTCCCAG                         GGGATGTCATTCTCAATCAGGAACCTTACGCTTCTACACCTAACAAGATTT
genomic: CATCCCCGGCAAGGGAAGGGGTCTCATCGCTACTTGCACCTTCTTCCCAGgtgaaaccgc ... gttgttgcagGGGATGTCATTCTCAATCAGGAACCTTACGCTTCTACACCTAACAAGATTT
EST: gi|71322965|gb|DR798157.1|DR798157
EST:     CATCCCCGGCAAGGGAAGGGGTCTCATCGCTACTTGCACCTTCTTCCCAG                         GGGATGTCATTCTCAATCAGGAACCTTACGCTTCTACACCTAACAAGATTT
genomic: CATCCCCGGCAAGGGAAGGGGTCTCATCGCTACTTGCACCTTCTTCCCAGgtgaaaccgc ... gttgttgcagGGGATGTCATTCTCAATCAGGAACCTTACGCTTCTACACCTAACAAGATTT
EST: gi|211474512|gb|FK963001.1|FK963001
EST:     CATCCCCGGCAAGGGAAGGGGTCTCATCGCTACTCGCACCTTCTTCCCAG                         GGGATGTCATTCTCAATCAGGAACCTTACGCTTCTACACCTAACAAGATTT
genomic: CATCCCCGGCAAGGGAAGGGGTCTCATCGCTACTTGCACCTTCTTCCCAGgtgaaaccgc ... gttgttgcagGGGATGTCATTCTCAATCAGGAACCTTACGCTTCTACACCTAACAAGATTT
EST: gi|211471998|gb|FK962995.1|FK962995
EST:     CATCCCCGGCAA-GGAAGGGGTCTCATCGCTACTTTCACCTTCTTCCCAG                         GGGATGTCATTCTCAATCAGGAACCTTACGCTTCTACACCTAACAAGATTT
genomic: CATCCCCGGCAAGGGAAGGGGTCTCATCGCTACTTGCACCTTCTTCCCAGgtgaaaccgc ... gttgttgcagGGGATGTCATTCTCAATCAGGAACCTTACGCTTCTACACCTAACAAGATTT
EST: gi|211474513|gb|FK963002.1|FK963002
EST:     CATCCCCGGCAAGGGAAGGGGTCTCATCGCTACTTTCACCTTCTTCCCAG                         GGGATGTCATTCTCAATCAGGAACCTTACGCTTCTACACCTAACAAGATTT
genomic: CATCCCCGGCAAGGGAAGGGGTCTCATCGCTACTTGCACCTTCTTCCCAGgtgaaaccgc ... gttgttgcagGGGATGTCATTCTCAATCAGGAACCTTACGCTTCTACACCTAACAAGATTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttccgctgtgttggttcatttgcttggccttcacttgcggtgtgttgttgcagGGGATGTCATTCTCAATCAGGAACCTTACGCTTCTACACCTAACAAGATTTTAGTTGGATCGAGCTGTGACCATTGTTTCACCTCTGGCAACCTGAGGAA
                ttcattt  TA-rich tract