1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aatggtgtatggccaggggcgctgaccctggaattcattaaaagaaaaatgaatggtgaatggtgtgaactttagtgagatggtccttttctgtttgtagGATTTCGTTGAAGTTCAGGGGAAGAAGCTCAAATTCAGTGCCGAGCTCCGTGCTAATCTTGATGGGATCTTCTCTGAGATGTCACGGTGTATGGACAAGG
species | Zea mays |
transcript | GRMZM2G455978_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCCTCCGGAAAGGCGCGCTACGCGGCTCCTTCCCTCCATCTTGGATTAAG GATTTCGTTGAAGTTCAGGGGAAGAAGCTCAAATTCAGTGCCGAGCTCCGTEST: gi|78111700|gb|DV530097.1|DV530097
genomic: CCCTCCGGAAAGGCGCGCTACGCGGCTCCTTCCCTCCATCTTGGATTAAGgtctggtcgc ... ctgtttgtagGATTTCGTTGAAGTTCAGGGGAAGAAGCTCAAATTCAGTGCCGAGCTCCGT
EST: CCCTCCGGAAAGGCGCGCTACGCGGCTCCTTCCCTCCATCTTGGATTAAG GATTTCGTTGAAGTTCAGGGGAAGAAGCTCAAATTCAGTGCCGAGCTCCGT
genomic: CCCTCCGGAAAGGCGCGCTACGCGGCTCCTTCCCTCCATCTTGGATTAAGgtctggtcgc ... ctgtttgtagGATTTCGTTGAAGTTCAGGGGAAGAAGCTCAAATTCAGTGCCGAGCTCCGT
aaaatgaatggtgaatggtgtgaactttagtgagatggtccttttctgtttgtagGATTTCGTTGAAGTTCAGGGGAAGAAGCTCAAATTCAGTGCCGAGCTCCGTGCTAATCTTGATGGGATCTTCTCTGAGATGTCACGGTGTATGGACAAGG
tccttttctgtttgt CT-rich tract
aacttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatggtgtatggccaggggcgctgaccctggaattcattaaaagaaaaatgaatggtgaatggtgtgaactttagtgagatggtccttttctgtttgtagGATTTCGTTGAAGTTCAGGGGAAGAAGCTCAAATTCAGTGCCGAGCTCCGTGCTAATCTTGATGGGATCTTCTCTGAGATGTCACGGTGTATGGACAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - gtgtatg
- - - - - - - - -ggcgctg
- - - - - - - - - - - - -ccctgga
- - - - - - - - - - - - - - - - - - - - -aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - atgaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgaatg