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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgattttgtgcatcttggaggactaatcattctctgaacgacatttagGCTTCACGGTAACATTGAATCGATGGCTGTGTTGTCCGATGGCACAGAGAATAGGCGAGACTCCATTGCAGTTACGTTTAACGATGCAAAAATAACATGT

Basic information

species Zea mays
transcript GRMZM2G455115_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G455115_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os04g18010.3 (Oryza sativa), 3'ss of exon 1
----------------------------------------------------------gtattgattttgtgca---tcttggaggactaatcattctctgaacgacatttagGCTTCACGGTAACATTGAATCGATGGCTGTGTTGTCCGATGGCACAGAGAATAGGCGAGACTCCATTGCAGTTACGTTTAACGATGCAAAAATAACATGT
                                                          | |  ||||| || |    |  | | | ||||||   |   |||| | ||| |||||| || || |||||||| || ||| | |||||||| |||||  | ||||||||||||| | | |||||| || | ||||| |||||||||||||| |||
gtgcggtgggcggtctcttgcttcttacaatttaccactggttttagatttcagaaacgaaaggatttggtcctagtttattgtgtactaatttgttgatgaatggcatgtagGCTCCATGGGAACATTGAGTCCATGACCGTGTTGTCAGATGGAGCGGAGAATAGGCGAGCCACTATTGCACTTGCATTTAAGGATGCAAAAATAACTTGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtattgattttgtgcatcttggaggactaatcattctctgaacgacatttagGCTTCACGGTAACATTGAATCGATGGCTGTGTTGTCCGATGGCACAGAGAATAGGCGAGACTCCATTGCAGTTACGTTTAACGATGCAAAAATAACATGT
                           gactaat  putative branch site (score: 2)
        attgatttt  TA-rich tract