1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaaagaaaccatctttccaccttctcccaccccctccggacccataggtgccaccggcatttgtcttgcgattgcttggcccagatctgcgtgcattcggcatttctcgtgcgtagATCTCGCGTGTACGGTGTACCTCGTTTCCCTCGGCGGGTGGATCAGTGACGGCTTGGTCGAGATGGACGATGTGGTTGATGACATCATCTGTGGAACGGA
species | Zea mays |
transcript | GRMZM2G452633_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTCGTCGTGCTCTTCCGTACCGCCATTCCCTAGCACTGTCCACGGGCGAG ATCT--C--G--C-GTGTACCTCGTTTCCCTCGGCGGGTGGATCAGTGACGEST: gi|76010437|gb|DT937607.1|DT937607
genomic: GTCGTCGTGCTCTTCCGTACCGCCATTCCCTAGCACTGTCCACGGGCGAGgtaaagaaac ... tcgtgcgtagATCTCGCGTGTACGGTGTACCTCGTTTCCCTCGGCGGGTGGATCAGTGACG
EST: GTCGTCGTGCTCTTCCGTACCGCCATTCCCTAGCACTGTCCACGGGCGAG ATCTCGCGTGTACGGTGTACCTCGTTTCCCTCGGCGGGTGGATCAGTGACGEST: gi|71329761|gb|DR801593.1|DR801593
genomic: GTCGTCGTGCTCTTCCGTACCGCCATTCCCTAGCACTGTCCACGGGCGAGgtaaagaaac ... tcgtgcgtagATCTCGCGTGTACGGTGTACCTCGTTTCCCTCGGCGGGTGGATCAGTGACG
EST: GTCGTCGTGCTCTTCCGTACCGCCATTCCCTAGCACTGTCCACGGGCGAG ATCTCGCGTGTACGGTGTACCTCGTTTCCCTCGGCGGGTGGATCAGTGACGEST: gi|30306595|gb|CD001268.1|CD001268
genomic: GTCGTCGTGCTCTTCCGTACCGCCATTCCCTAGCACTGTCCACGGGCGAGgtaaagaaac ... tcgtgcgtagATCTCGCGTGTACGGTGTACCTCGTTTCCCTCGGCGGGTGGATCAGTGACG
EST: GTCGTCG-GCTCTTCCGTACCGCCATTCCCTAGCACTGTCCACGGGCGAG ATCTCGCGTGTACGGTGTACCTCGTTTCCCTCGGCGGGTGGATCAGTGACG
genomic: GTCGTCGTGCTCTTCCGTACCGCCATTCCCTAGCACTGTCCACGGGCGAGgtaaagaaac ... tcgtgcgtagATCTCGCGTGTACGGTGTACCTCGTTTCCCTCGGCGGGTGGATCAGTGACG
tgtcttgcgattgcttggcccagatctgcgtgcattcggcatttctcgtgcgtagATCTCGCGTGTACGGTGTACCTCGTTTCCCTCGGCGGGTGGATCAGTGACGGCTTGGTCGAGATGGACGATGTGGTTGATGACATCATCTGTGGAACGGA
catttctc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagaaaccatctttccaccttctcccaccccctccggacccataggtgccaccggcatttgtcttgcgattgcttggcccagatctgcgtgcattcggcatttctcgtgcgtagATCTCGCGTGTACGGTGTACCTCGTTTCCCTCGGCGGGTGGATCAGTGACGGCTTGGTCGAGATGGACGATGTGGTTGATGACATCATCTGTGGAACGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA