1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cttgctggcattgggaagggccctattactcggtacgatggcatcaatagttgctcaggatgaagaaaacaatcgaactgtttttcttgtgtctatacagAACCGAGGCATGGAGGACGAAGAAAACATCGAGGGAGAACTGTTGCTCGTGGAGTCACAACTCCACGACATCCAAG
species | Zea mays |
transcript | GRMZM2G451856_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGGGCTCCCCGGCAGCCTCTACCGAGCAGAAAGCTGAGTTCTACCCCAG AACCGAGGCATGGAGGACGAAGAAAACATCGAGGGAGAACTGTTGCTCGTGEST: gi|60349642|gb|DN216615.1|DN216615
genomic: GCGGGCTCCCCGGCAGCCTCTACCGAGCAGAAAGCTGAGTTCTACCCCAGgtgagagctg ... gtctatacagAACCGAGGCATGGAGGACGAAGAAAACATCGAGGGAGAACTGTTGCTCGTG
EST: CTCCCCGGCAGCCTCTACCGAGCAGAAAGCTGAGTTCTACCCCAG AACCGAGGCATGGAGGACGAAGAAAACATCGAGGGAGAACTGTTGCTCGTGEST: gi|211146985|gb|FL136066.1|FL136066
genomic: CTCCCCGGCAGCCTCTACCGAGCAGAAAGCTGAGTTCTACCCCAGgtgagagctg ... gtctatacagAACCGAGGCATGGAGGACGAAGAAAACATCGAGGGAGAACTGTTGCTCGTG
EST: GCGGGCTCCCCGGCAGCCTCAACCGAGCAGAAAGCTGAGTTCTACCCCAG AACCGAGGCATGGAGGACGAAGAAAACATCGAGGGAGAACTGTTGCTCGTGEST: gi|76285987|gb|DV025555.1|DV025555
genomic: GCGGGCTCCCCGGCAGCCTCTACCGAGCAGAAAGCTGAGTTCTACCCCAGgtgagagctg ... gtctatacagAACCGAGGCATGGAGGACGAAGAAAACATCGAGGGAGAACTGTTGCTCGTG
EST: GCGGGCTCCCCGGCAGCCTCTACCGAGCAGAAAGCTGAGTTCTACCCCAG AACCGAGGCATGGAGGACGAAGAAAACATCGAGGGAGAACTGTTGCTCGTGEST: gi|211148400|gb|FL136068.1|FL136068
genomic: GCGGGCTCCCCGGCAGCCTCTACCGAGCAGAAAGCTGAGTTCTACCCCAGgtgagagctg ... gtctatacagAACCGAGGCATGGAGGACGAAGAAAACATCGAGGGAGAACTGTTGCTCGTG
EST: CGGNGCTCCCCGGCAGCCTCAACCGAGCAGAAAGCTGAGTTCTACCCCAG AACCGAGGCATGGAGGACGAAGAAAACATCGAGGGAGAACTGTTGCTCGTGEST: gi|76920013|gb|DV167966.1|DV167966
genomic: CGG-GCTCCCCGGCAGCCTCTACCGAGCAGAAAGCTGAGTTCTACCCCAGgtgagagctg ... gtctatacagAACCGAGGCATGGAGGACGAAGAAAACATCGAGGGAGAACTGTTGCTCGTG
EST: GCGGGCTCCCCGGCAGCCTCTACCGAGCAGAAAGCTGAGTTCTACCCCAG AACCGAGGCATGGAGGACGAAGAAAACATCGAGGGAGAACTGTTGCTCGTG
genomic: GCGGGCTCCCCGGCAGCCTCTACCGAGCAGAAAGCTGAGTTCTACCCCAGgtgagagctg ... gtctatacagAACCGAGGCATGGAGGACGAAGAAAACATCGAGGGAGAACTGTTGCTCGTG
aatagttgctcaggatgaagaaaacaatcgaactgtttttcttgtgtctatacagAACCGAGGCATGGAGGACGAAGAAAACATCGAGGGAGAACTGTTGCTCGTGGAGTCACAACTCCACGACATCCAAG
tttttcttgtgtct CT-rich tract
aaaacaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttgctggcattgggaagggccctattactcggtacgatggcatcaatagttgctcaggatgaagaaaacaatcgaactgtttttcttgtgtctatacagAACCGAGGCATGGAGGACGAAGAAAACATCGAGGGAGAACTGTTGCTCGTGGAGTCACAACTCCACGACATCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- tgctggc
- - - - - - - - - - - - - - - - - - - - - - - - -gttgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaa