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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attggacattagtaataacagttttcctgatttctgacactgcacatcccaccactacatctatgaagctgctggagcttatcctccctcttctttacagATTACGGCAGCTCGTTTCCAGATGTTGTTCGAGGCCTCGTCCATGCTCTCGAGTCATTGAACTCAAACAATTCATCGTTACCTTCAAATTTCAAACAGAG

Basic information

species Zea mays
transcript GRMZM2G446895_T04
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G446895_T04 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os08g05670.1 (Oryza sativa), 3'ss of exon 12
-attggacattagtaataacagttttcctgatttctgacactgcacatcccaccactacatctatgaagctgctggagcttatcctccctcttctttacagATTACGGCAGCTCGTTTCCAGATGTTGTTCGAGGCCTCGTCCATGCTCTCGAGTCATTGAACTCAAACAATTCATCGTTACCTTCAAATTTCAAACAGAG
  |         |   ||    |||  || || |  || | ||    | | |  |  | |      |  |   |      |||  |||||||||| || |||||| || ||||| ||||||||||||||||||||  |||  |||| ||| ||||||||||  || |||| || ||| | |||||||||||||||||| | 
tgtcatgatgctgctttatttctttctctaatctgcga-attgatttttctaatagaataaaatgtattccaatttcttatattttccctcttctgtatagATTATGGTAGCTCATTTCCAGATGTTGTTCGAGGAATCGAGCATGTTCTTGAGTCATTGAGTTCCAACAGTTTATCATCACCTTCAAATTTCAAACATAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|160481627|gb|EY254459.1|EY254459
EST:     GATAAAGATGCATGCAGCTGTTGCTCTATCAGTGCCAGTGTCAAGGCTTG                         ATTACGGCAGCTCGTTTCCAGATGTTGTTCGAGGCCTCGTCCATGCTCTCG
genomic: GATAAAGATGCATGCAGCTGTTGCTCTATCAGTGCCAGTGTCAAGGCTTGgttagtcccc ... ttctttacagATTACGGCAGCTCGTTTCCAGATGTTGTTCGAGGCCTCGTCCATGCTCTCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcccaccactacatctatgaagctgctggagcttatcctccctcttctttacagATTACGGCAGCTCGTTTCCAGATGTTGTTCGAGGCCTCGTCCATGCTCTCGAGTCATTGAACTCAAACAATTCATCGTTACCTTCAAATTTCAAACAGAG
                                cttatcctccctcttc  CT-rich tract
                                             ttcttta  TA-rich tract