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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaggagccgtatgaagctaaggtttcatgtacggttttggaatagcggtgggaactgtgatgttatcatcgactatgattatctaatagttcaagtacagTTGATATAGTTGAAGCACAGTCCAAATATGGTTTTTTTGGATGGAATCTTTGGCGTCAGCCTATAGGTTTTCTAGTTTTTCTAATTTCTTCTTTGGCAGA

Basic information

species Zea mays
transcript GRMZM2G444541_T03
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G444541_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Osp1g00960.1 (Oryza sativa), 3'ss of exon 1
---------------------gaggagccgtatgaagctaaggtttcatgtacggttttggaatagcggtgggaactgtgatgttatcatcgactatgattatctaatagttcaagtacagTTGATATAGTTGAAGCACAGTCCAAATATGGTTTTTTTGGATGGAATCTTTGGCGTCAGCCTATAGGTTTTCTAGTTTTTCTAATTTCTTCTTTGGCAGA
                     ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||                     
ctttccttttttctgatcatagaggagccgtatgaaactaaggtttcatgtacggttttggaatagcggtgggaactgtgatgttatcgtcgactatgatTATCCAACAGTTCAAGTACAGTTGATATAGTTGAAGCACAGTCAAAATATGGTTTTTTTGGATGGAATCTTTGGCGTCAGCCTATAGGTTTTCTGGTTTT---------------------

upper sequence: GRMZM2G444541_T03 (Zea mays), 3'ss of exon 1
lower sequence: ATCG01100.1 (Arabidopsis thaliana), 3'ss of exon 1
---------------------gaggagccgtatgaagctaaggtttcatgtacggttttggaatagcggtgggaactgtgatgttatcatcgactatgattatctaatagttcaagtacagTTGATATAGTTGAAGCACAGTCCAAATATGGTTTTTTTGGATGGAATCTTTGGCGTCAGCCTATAGGTTTTCTAGTTTTTCTAATTTCTTCTTTGGCAGA
                     |||||||||||||| || |||   |||||||||||| || ||||||||||  ||  || ||||| ||  |||||| |||||||||| |||| ||||||||||||||||||||| ||||| || |||||||||||||  ||||||||| | |||||||| |||||||||||| |  ||||                     
ttagatttatttatggcccccgaggagccgtatgaggccaagacctcatgtacggttctgaaatagcggtgaaaatagtaatgttctcgccgactaggatTATCTAACAGTTTAAGTACAGTTGATATAGTTGAGGCACAATCAAAATATGGTTTTTGGGGATGGAATTTGTGGCGTCAACCTATAGGTTTTATCATTTT---------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cggtgggaactgtgatgttatcatcgactatgattatctaatagttcaagtacagTTGATATAGTTGAAGCACAGTCCAAATATGGTTTTTTTGGATGGAATCTTTGGCGTCAGCCTATAGGTTTTCTAGTTTTTCTAATTTCTTCTTTGGCAGA
                                   atctaat  putative branch site (score: 3)
                            tatgattatctaata  TA-rich tract