Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cattagttacgaagggtacggtacggatgaaacgttaaatctgagggatactcataaccgatttgtgaccatgacattttttttttgttccatgttgcagACCTACTCAAATCCATTACAAGATAACCCGGCATACTCTGTTGTGAA

Basic information

species Zea mays
transcript GRMZM2G443985_T03
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G443985_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os06g05860.1 (Oryza sativa), 3'ss of exon 1
-cattagttacgaagggtacggtacggatgaaacgttaaat-ctgagggatactcataaccgatttgtgaccatgacattttttttttgttccatgttgcagACCTACTCAAATCCATTACAAGATAACCCGGCATACTCTGTTGTGAA
  ||  || | ||   ||     |  |       | |||||  ||||   |       |      |||||  ||||      || | ||||   || ||||||| |||||||||||| | |||||||||||||||||||| ||||||||
tgatacgtgatgattagtc--acattggccttgtgataaatgttgagtcttcgattctatttcgctgtgattatgatggccattgtctgttgtttgatgcagACATACTCAAATCCACTGCAAGATAACCCGGCATACTCGGTTGTGAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148972520|gb|EE023481.2|EE023481
EST:     ACGTCTTAGAAGACGTGCCGCACGTGTCGGACTACCTCCCCGATCTCCCG                         ACCTACTCAAATCCATTACAAGATAACCCGGCATACTCTGTTGTGAA
genomic: ACGTCTTAGAAGACGTGCCGCACGTGTCGGACTACCTCCCCGATCTCCCGgtgagtgccg ... catgttgcagACCTACTCAAATCCATTACAAGATAACCCGGCATACTCTGTTGTGAA
EST: gi|211132977|gb|FL170882.1|FL170882
EST:     ACGTCTTAGAAGACGTGCCGCACGTGTCGGACTACCTCCCCGATCTCCCG                         ACCTACTCAAATCCATTACAAGATAACCCGGCATACTCTGTTGTAAA
genomic: ACGTCTTAGAAGACGTGCCGCACGTGTCGGACTACCTCCCCGATCTCCCGgtgagtgccg ... catgttgcagACCTACTCAAATCCATTACAAGATAACCCGGCATACTCTGTTGTGAA
EST: gi|211132967|gb|FL170872.1|FL170872
EST:     ACGTCTTAGAAGACGTGCCGCACGTGTCGGACTACCTCCCCGATCTCCCG                         ACCTACTCAAATCCATTACAAGATAACCCGGCATACTCTGTTGTGAA
genomic: ACGTCTTAGAAGACGTGCCGCACGTGTCGGACTACCTCCCCGATCTCCCGgtgagtgccg ... catgttgcagACCTACTCAAATCCATTACAAGATAACCCGGCATACTCTGTTGTGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggatactcataaccgatttgtgaccatgacattttttttttgttccatgttgcagACCTACTCAAATCCATTACAAGATAACCCGGCATACTCTGTTGTGAA
      tcataac  putative branch site (score: 2)
                             cattttttttttgttc  putative PPT
                         atgacatttttttttt  TA-rich tract