1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tattctagatataagttgattggaagcgtgttcagacggccttgtacgagactacatgcttttggtcagtttattgtaataacttgttaaatttatgcagGATAGGCTACAGATGGATTCGGCAGTTCCTAGCCCTCTGCTGTTATACCCTCTTGCTGATGCCAGGTTTTATTCAAG
species | Zea mays |
transcript | GRMZM2G439203_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAGACCTTCCTCCTCACGAGGCTCACCCTGATCCTCCTCCGCTACCTC-- G---GGCTACAGATGGATTCGGCAGTTCCTAGCCCTCTGCTGTTATACCCTEST: gi|211157802|gb|FL365665.1|FL365665
genomic: GAGACCTTCCTCCTCACGAGGCTCACCCTGATCCTCCTCCGCTACCTCGGgtacgcatca ... atttatgcagGATAGGCTACAGATGGATTCGGCAGTTCCTAGCCCTCTGCTGTTATACCCT
EST: GAGACCTTCCTCCTCACGAGGCTCACCCTGATCCTCCTCCGCTACCTC-- G---GGCTACAGATGGATTCGGCAGTTCCTAGCCCTCTGCTGTTATACCCT
genomic: GAGACCTTCCTCCTCACGAGGCTCACCCTGATCCTCCTCCGCTACCTCGGgtacgcatca ... atttatgcagGATAGGCTACAGATGGATTCGGCAGTTCCTAGCCCTCTGCTGTTATACCCT
acgagactacatgcttttggtcagtttattgtaataacttgttaaatttatgcagGATAGGCTACAGATGGATTCGGCAGTTCCTAGCCCTCTGCTGTTATACCCTCTTGCTGATGCCAGGTTTTATTCAAG
taataac putative branch site (score: 21)
agtttattgtaataac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattctagatataagttgattggaagcgtgttcagacggccttgtacgagactacatgcttttggtcagtttattgtaataacttgttaaatttatgcagGATAGGCTACAGATGGATTCGGCAGTTCCTAGCCCTCTGCTGTTATACCCTCTTGCTGATGCCAGGTTTTATTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - -ttgattg