Sequence
atgc intronic sequence ATGC exonic sequencegtacttatcgattagatgagcctctatttttaggcagtacatacattatatcatctaaataacctattttctagTGGCTTGGTGAAGGAAAAAATTGTGAAAGCTGTGTTTTCACTGACAAGAAAAATGCTCCAAGTGTAATTTTTGTGGACGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G438355_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g22420.2 (Oryza sativa), 3'ss of exon 22
-----gtacttatcgattag-atgagcctctatttttag----gcagtacatacattatatcatctaaataacctattttctagTGGCTTGGTGAAGGAAAAAA--TTGTGAAAGCTGTGTTTTCACTGACAAG-AAAAATGCTCCAAGTGTAATTTTTGTGGACGAG----------------
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gtattttactaaatgattgctattagtccatggttttgtttttgcattttgggcatctgaaacattgtgtaccat-taccacagTGGTTTGGTGAAGGAGAGAAGTTTGTGAAAGCTGTATTTTCACTGGCAAGCAAAATTGCTCCAAGTGTTATTTTCGTGGATGAGGTAAGTAAATTGTAAT
upper sequence: GRMZM2G438355_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g22420.1 (Oryza sativa), 3'ss of exon 22
-----gtacttatcgattag-atgagcctctatttttaggcagtacatacattatatcatctaaataacctattttc----tagTGGCTTGGTGAAGGAAAAAA--TTGTGAAAGCTGTGTTTTCACTGACAAG-AAAAATGCTCCAAGTGTAATTTTTGTGGACGAG
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gtattttactaaatgattgctattagtccatggtttt-gtttttgcattttgggcatctgaaacattgtgtaccattaccacagTGGTTTGGTGAAGGAGAGAAGTTTGTGAAAGCTGTATTTTCACTGGCAAGCAAAATTGCTCCAAGTGTTATTTTCGTGGATGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcctctatttttaggcagtacatacattatatcatctaaataacctattttctagTGGCTTGGTGAAGGAAAAAATTGTGAAAGCTGTGTTTTCACTGACAAGAAAAATGCTCCAAGTGTAATTTTTGTGGACGAG
aaataac putative branch site (score: 2)
cctattttct CT-rich tract
atacattatatcatct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacttatcgattagatgagcctctatttttaggcagtacatacattatatcatctaaataacctattttctagTGGCTTGGTGAAGGAAAAAATTGTGAAAGCTGTGTTTTCACTGACAAGAAAAATGCTCCAAGTGTAATTTTTGTGGACGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA