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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtacccaagcttggagctgaaacgagttcacatccgcgttggaattcggttctctgaatctgttttgtgttttcgtctttttttttgcttttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGAT

Basic information

species Zea mays
transcript GRMZM2G437859_T03
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G437859_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g55500.3 (Oryza sativa), 3'ss of exon 1
----gtgcgtacccaagc--ttggagctgaaacgagttcacatccgcgttggaattcggttctctgaatctgttttgtgttttcgtctttttttttgcttttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGAT--
    ||| |  || ||||    |  |||| |  |  ||     | || | || |||  |   ||||||||        || || |      ||||||||     ||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| | ||| |||| ||||||||||||||   |||   
gtgcgtgagagccgaagcggcggcggctgcattgcattttttcctgc-tcgggatttcgcattctgaatccac-----gtcttgga-----tttttgct----gtttcagGGGAGGCGATCATACTGGGATTCCAGCACTACATCCTGGCGCTGGGCACGGCGGTGATGATCCCGGCGGTGCTGGTGCCCATGATGGGCGGGAGCGACGT

upper sequence: GRMZM2G437859_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g55500.4 (Oryza sativa), 3'ss of exon 1
----gtgcgtacccaagc--ttggagctgaaacgagttcacatccgcgttggaattcggttctctgaatctgttttgtgttttcgtctttttttttgcttttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGAT
    ||| |  || ||||    |  |||| |  |  ||     | || | || |||  |   ||||||||        || || |      ||||||||     ||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| | ||| |||| ||||||||||||||   ||| 
gtgcgtgagagccgaagcggcggcggctgcattgcattttttcctgc-tcgggatttcgcattctgaatccac-----gtcttgga-----tttttgct----gtttcagGGGAGGCGATCATACTGGGATTCCAGCACTACATCCTGGCGCTGGGCACGGCGGTGATGATCCCGGCGGTGCTGGTGCCCATGATGGGCGGGAGCGAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211100340|gb|FL069921.1|FL069921
EST:     GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG                         GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
EST: gi|50339069|gb|CO534195.1|CO534195
EST:     GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG                         GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
EST: gi|74244049|gb|DT651963.1|DT651963
EST:     GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG                         GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
EST: gi|149001123|gb|EE038382.2|EE038382
EST:     GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG                         GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
EST: gi|78084450|gb|DV512843.1|DV512843
EST:     GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG                         GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
EST: gi|211102812|gb|FL069930.1|FL069930
EST:     GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG                         GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
EST: gi|78081194|gb|DV509606.1|DV509606
EST:     GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG                         GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
EST: gi|211100342|gb|FL069923.1|FL069923
EST:     GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG                         GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
EST: gi|71439895|gb|DR820945.1|DR820945
EST:     GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG                         GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
EST: gi|74243489|gb|DT651403.1|DT651403
EST:     GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG                         GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
EST: gi|149071736|gb|EE160129.2|EE160129
EST:     GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG                         GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
EST: gi|211102808|gb|FL069926.1|FL069926
EST:     GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG                         GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
EST: gi|71431026|gb|DR812076.1|DR812076
EST:     GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG                         GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
EST: gi|76923378|gb|DV169457.1|DV169457
EST:     GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG                         GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
EST: gi|74238882|gb|DT646796.1|DT646796
EST:     GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG                         GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
EST: gi|74240437|gb|DT648351.1|DT648351
EST:     GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG                         GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
EST: gi|33467816|gb|CF244865.1|CF244865
EST:     GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG                         GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
EST: gi|91049745|gb|EB160163.1|EB160163
EST:     GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG                         GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
EST: gi|71449525|gb|DR830575.1|DR830575
EST:     GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG                         GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
EST: gi|211102810|gb|FL069928.1|FL069928
EST:     GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG                         GCGAGGCGATCATACTGGGCTTCCAGCACT
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACT
EST: gi|211102809|gb|FL069927.1|FL069927
EST:     GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG                         GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
EST: gi|50331687|gb|CO526813.1|CO526813
EST:     GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG                         GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
EST: gi|91878994|gb|EB408951.1|EB408951
EST:     GGAGCAGCTCCAGGGGTTCCAGTACTGCATCGACTCCCACCCTCCCTGGG                         GCGAGGCGATCATACTG
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTG
EST: gi|93016333|gb|EB641853.1|EB641853
EST:     GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG                         GCGAGGCGATCATACTGGG
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGG
EST: gi|211100339|gb|FL069920.1|FL069920
EST:     GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG                         GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
EST: gi|211100336|gb|FL069917.1|FL069917
EST:     GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG                         GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
EST: gi|71310987|gb|DR791795.1|DR791795
EST:     GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG                         GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
EST: gi|211100341|gb|FL069922.1|FL069922
EST:     GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG                         GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
EST: gi|71438783|gb|DR819833.1|DR819833
EST:     GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG                         GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcggttctctgaatctgttttgtgttttcgtctttttttttgcttttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGAT
                 ttttgtgttttcgtct  CT-rich tract
                                tttttttttgctttt  TA-rich tract