Sequence
atgc intronic sequence ATGC exonic sequence...tgactggccattgaatggaaatctaagtgtgagattagtaatacttgcggattgtttggctgattgacctggttcgtttgcggtatggtggttggcgcagATCTCTCGAAGCACCCGGTGGATGGGTTCTCTACTGGGCTGGTCGACGACAGCAATGTCTTCGAGTGGCAGGTCACCATCATCGGACCGCCTGACACCCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G434519_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g62244.1 (Oryza sativa), 3'ss of exon 1
------------------tgactggccattgaatggaaat-ctaagtgtgagattagtaatacttgcggattgtttggctgattgacctggttcgtttgcggtatggtggttggcgcagATCTCTCGAAGCACCCGGTGGATGGGTTCTCTACTGGGCTGGTCGACGACAGCAATGTCTTCGAGTGGCAGGTCACCATCATCGGACCGCCTGACACCCT
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gtgcggatccatgcggctcgcttcgtcctcgttcgtcggtgttctgtttgcgccccttttttttcatccgtggattgatcgatttcggggttgggtttgtggtttggtgattggtgcagATCTCGCGAAGCACCCCGTGGATGGGTTCTCGGCTGGGTTAGTCGACGACAGCAACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCT
upper sequence: GRMZM2G434519_T01 (Zea mays), 3'ss of exon 1
lower sequence: EDP03036 (Chlamydomonas reinhardtii), 3'ss of exon 1
tgactggccattgaatggaaatctaagtgtgagattagtaatacttgcggattgtttggctgattgacctggttcgtttgcggtatggtggttggcgcagATCTCTCGAAGCACCCGGTGGATGGGTTCTCTACTGGGCTGGTCGACGACAGCAATGTCTTCGAGTGGCAGGTCACCATCATCGGACCGCCTGACACCCT
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------------------------gtgcgccggtttcgcag-gcgcgacacttgagcaaaccccagacgaagctc--tcgcgccctgcc------cgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATAGCAACGTGTTCGAGTGGCAGGTCACCATCATTGGGCCCCCGGAGACACT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgcggattgtttggctgattgacctggttcgtttgcggtatggtggttggcgcagATCTCTCGAAGCACCCGGTGGATGGGTTCTCTACTGGGCTGGTCGACGACAGCAATGTCTTCGAGTGGCAGGTCACCATCATCGGACCGCCTGACACCCT
gattgac putative branch site (score: 3)
attgttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgactggccattgaatggaaatctaagtgtgagattagtaatacttgcggattgtttggctgattgacctggttcgtttgcggtatggtggttggcgcagATCTCTCGAAGCACCCGGTGGATGGGTTCTCTACTGGGCTGGTCGACGACAGCAATGTCTTCGAGTGGCAGGTCACCATCATCGGACCGCCTGACACCCT
tgactgg
- - - - - ttgaatg
- - - - - - - - - - - - - - - - - - - - -tacttgc
- - - - - - - - - - - - - - - - - - - - - - - - - -ttgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgattg