1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...accaccagtttgttaatgcaatccactcctgagtgcggaatattaactctagcacttgtgctacacttcattcatcaacatatgggttttgcttctccagAGATGAACATGGGCTGTTTTATGCACTGGATCTTGGAGGGACCAACTTCCGTGTGCTGCGAGTCCAACTAGGAGGAAGGGAGAAACGTGTTGTCAAACAA
species | Zea mays |
transcript | GRMZM2G432801_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
actctagcacttgtgctacacttcattcatcaacatatgggttttgcttctccagAGATGAACATGGGCTGTTTTATGCACTGGATCTTGGAGGGACCAACTTCCGTGTGCTGCGAGTCCAACTAGGAGGAAGGGAGAAACGTGTTGTCAAACAA
tattaac putative branch site (score: 298)
ttttgcttctcc putative PPT
aacatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accaccagtttgttaatgcaatccactcctgagtgcggaatattaactctagcacttgtgctacacttcattcatcaacatatgggttttgcttctccagAGATGAACATGGGCTGTTTTATGCACTGGATCTTGGAGGGACCAACTTCCGTGTGCTGCGAGTCCAACTAGGAGGAAGGGAGAAACGTGTTGTCAAACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
-ccaccag
- - - - - - - aatgcaa
- - - - - - - - - - - ccactcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgctac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caacata