Sequence
atgc intronic sequence ATGC exonic sequence...ttgttgattttagtgaccaaattccattccattttgacttatgaaattgtagaagtgatatacctatatcagaggagtttacttttatttttttgtacagGAAAGTGGACCTAAGTTCGGCACCATGATGGGTGTCTTTGTTCCATGCTTGCAGAACATCTTGGGAATCATTTATTATATCCGTTTTACCTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G432083_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os08g23440.1 (Oryza sativa), 3'ss of exon 4
---ttgttgattttagtgaccaaattccattccattttgacttatgaaattgtagaagt-gatatacctatatcagaggagtttacttttatttttttgtacagGAAAGTGGACCTAAGTTCGGCACCATGATGGGTGTCTTTGTTCCATGCTTGCAGAACATCTTGGGAATCATTTATTATATCCGTTTTACCTG
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attctgttcattgccatcatttttgttctttttattttg---tatttgttcatggcatttgagtttatgacgtttgattccattacttttgttggtctg-gcagGAAACTGGACCCAAGTTTGGTACCATGATGGGTGTCTTTGTCCCATGCTTGCAGAATATATTGGGAATCATTTATTATATCCGTTTTACATG
upper sequence: GRMZM2G432083_T01 (Zea mays), 3'ss of exon 1
lower sequence: AT1G30450.1 (Arabidopsis thaliana), 3'ss of exon 3
-ttgttgattttagtgaccaaattccattccattttgacttatgaaattgtagaagtgatatacctatatcagaggagtttacttt---tatttttttgtacagGAAAGTGGACCTAAGTTCGGCACCATGATGGGTGTCTTTGTTCCATGCTTGCAGAACATCTTGGGAATCATTTATTATATCCGTTTTACCTG
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tccctagtttcctgtaagca---tctttttgacatgggcatcatgtattgctgaattgatggttttcta-caatgttacttacttcagctgtatctttttgcagCCTCCTGCTCTCAAGATGGGTACAATGATGGGAGTTTTCGTTCCCTGCTTGCAAAACATATTAGGAATTATATATTATATCCGTTTCACATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attgtagaagtgatatacctatatcagaggagtttacttttatttttttgtacagGAAAGTGGACCTAAGTTCGGCACCATGATGGGTGTCTTTGTTCCATGCTTGCAGAACATCTTGGGAATCATTTATTATATCCGTTTTACCTG
tttacttttatttttt CT-rich tract
agtttacttttatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttgttgattttagtgaccaaattccattccattttgacttatgaaattgtagaagtgatatacctatatcagaggagtttacttttatttttttgtacagGAAAGTGGACCTAAGTTCGGCACCATGATGGGTGTCTTTGTTCCATGCTTGCAGAACATCTTGGGAATCATTTATTATATCCGTTTTACCTG
-tgttgat
- - - - - - - gaccaaa
- - - - - - - - - - - -ccattcc