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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atcgggctgtccctttttttctctttgctgcaagctctatgggatctgcgaatggttgttgcctcgatttgttaaagggttgaacctttgtttgatgcagGAGACCTGCCCCTCGGTGAAGAACATCCTCTTGCTGGACTCGGAGGGAAAGCGCGTCGCCGTAAAGTACTACAGCGATGACTGGCCTACTCTATCCGCGA

Basic information

species Zea mays
transcript GRMZM2G431350_T03
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G431350_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os05g38610.1 (Oryza sativa), 3'ss of exon 1
atcgggctgtccctttttttctctttgctgcaagctctatgggatctgcgaatggttgttgcctcgatt-tgttaaagggttgaacctttgtttgatgcagGAGACCTGCCCCTCGGTGAAGAACATCCTCTTGCTGGACTCGGAGGGAAAGCGCGTCGCCGTAAAGTACTACAGCGATGACTGGCCTACTCTATCCGCGA
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gctgggctccccgtttcttggttttcacggcaggtgcaaatcgggatctcgtttgttgttagttagttgatggcgttgctttgatggtttgctcg-tacagGAATCCTGCCCTTCGGTGAAGAACATCCTTCTGCTGGATTCCGAGGGGAAGCGCGTCGCCGTCAAGTACTACACGGATGATTGGCCTACTCTCTCGGCGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211420230|gb|FL011436.1|FL011436
EST:     TCCCGACCACCGTCCTCGGCTCCCCGCCGTGAATCCATCATCCCGTAATG                         GAGACCTGCCCCTCGGTGAAGAACATCCTCTTGCTGGACTCGGAGGGAAAG
genomic: TCCCGACCACCGTCCTCGGCTCCCCGCCGTGAATCCATCATCCCGTAATGgtaggtagtc ... tttgatgcagGAGACCTGCCCCTCGGTGAAGAACATCCTCTTGCTGGACTCGGAGGGAAAG
EST: gi|211420234|gb|FL011440.1|FL011440
EST:     TCCCGACCACCGTCCTCGGCTCCCCGCCGTGAATCCATCATCCCGTAATG                         GAGACCTGCCCCTCGGTGAAGAACATCCTCTTGCTGGACTCGGAGGGAAAG
genomic: TCCCGACCACCGTCCTCGGCTCCCCGCCGTGAATCCATCATCCCGTAATGgtaggtagtc ... tttgatgcagGAGACCTGCCCCTCGGTGAAGAACATCCTCTTGCTGGACTCGGAGGGAAAG
EST: gi|211420229|gb|FL011435.1|FL011435
EST:     TCCCGACCACCGTCCTCGGCTCCCCGCCGTGAATCCATCATCCCGTAATG                         GAGACCTGCCCCTCGGTGAAGAACATCCTCTTGCTGGACTCGGAGGGAAAG
genomic: TCCCGACCACCGTCCTCGGCTCCCCGCCGTGAATCCATCATCCCGTAATGgtaggtagtc ... tttgatgcagGAGACCTGCCCCTCGGTGAAGAACATCCTCTTGCTGGACTCGGAGGGAAAG
EST: gi|211420232|gb|FL011438.1|FL011438
EST:     TCCCGACCACCGTCCTCGGCTCCCCGCCGTGAATCCATCATCCCGTAATG                         GAGACCTGCCCGTCGGTGAAGAACATCCTCTTGCTGGACTCGGAGGGAAAG
genomic: TCCCGACCACCGTCCTCGGCTCCCCGCCGTGAATCCATCATCCCGTAATGgtaggtagtc ... tttgatgcagGAGACCTGCCCCTCGGTGAAGAACATCCTCTTGCTGGACTCGGAGGGAAAG
EST: gi|211270449|gb|FL011429.1|FL011429
EST:     CCCGACCACCGTCCTCGRGCTCCCCGCCGTGAATCCATCATCCCGTAATG                         GAGACCTGCCCCTCGGTGAAGAACATCCTCTTGCTGGACTCGGAGGGAAAG
genomic: CCCGACCACCGTCCTCG-GCTCCCCGCCGTGAATCCATCATCCCGTAATGgtaggtagtc ... tttgatgcagGAGACCTGCCCCTCGGTGAAGAACATCCTCTTGCTGGACTCGGAGGGAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgcgaatggttgttgcctcgatttgttaaagggttgaacctttgtttgatgcagGAGACCTGCCCCTCGGTGAAGAACATCCTCTTGCTGGACTCGGAGGGAAAGCGCGTCGCCGTAAAGTACTACAGCGATGACTGGCCTACTCTATCCGCGA
                                            gtttgat  putative branch site (score: 5)
 cctttgttt  CT-rich tract
 atttgttaaa  TA-rich tract