1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtacgcaaaaagcaatacttgataaatttgagtaagggaagcaaaataaatttcttttttgtggggaagattcgatctttgagcccaaatttttgtgaggttaaatgataatcgatttcttgattcgtggcttgatgcttgccgcagGAGGTGAACGAGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTCGATTTCTGCTGGAG
species | Zea mays |
transcript | GRMZM2G425986_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGATGGCGCGGTGGCCGACCGTACGAAGCCTCGCCGCCGCTACGCAGGAG GAGGTGAACGAGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTCGATTTEST: gi|211278231|gb|FL236942.1|FL236942
genomic: GGATGGCGCGGTGGCCGACCGTACGAAGCCTCGCCGCCGCTACGCAGGAGgtacgcaaaa ... cttgccgcagGAGGTGAACGAGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTCGATTT
EST: GGATGGCGCGGTGGC-GACCGTACRAAGCCCCGCCGCCGCTACGCAGGAG GAGGTGAACGAGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTCGATTTEST: gi|211280031|gb|FL236954.1|FL236954
genomic: GGATGGCGCGGTGGCCGACCGTACGAAGCCTCGCCGCCGCTACGCAGGAGgtacgcaaaa ... cttgccgcagGAGGTGAACGAGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTCGATTT
EST: GGATGGCGCGGTGGCCGACCGTACGAAGCCTCGCCGCCGCTACGCAGGAG GAGGTGAACGAGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTCGATTTEST: gi|94478908|gb|EB707866.1|EB707866
genomic: GGATGGCGCGGTGGCCGACCGTACGAAGCCTCGCCGCCGCTACGCAGGAGgtacgcaaaa ... cttgccgcagGAGGTGAACGAGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTCGATTT
EST: GGATGGCGCGGTGGCCGACCGTACGAAGCCTCGCCGCCGCTACGCAGGAG GAGGTGAACGAGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTCGATTTEST: gi|93014281|gb|EB639801.1|EB639801
genomic: GGATGGCGCGGTGGCCGACCGTACGAAGCCTCGCCGCCGCTACGCAGGAGgtacgcaaaa ... cttgccgcagGAGGTGAACGAGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTCGATTT
EST: GGATGGCGCGCCGCCCGACCGTACGAAGCCTCGCCGCCGCTACGCAGGAG GAGGTGAACGAGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTCCGATTEST: gi|211280029|gb|FL236952.1|FL236952
genomic: GGATGGCGCGGTGGCCGACCGTACGAAGCCTCGCCGCCGCTACGCAGGAGgtacgcaaaa ... cttgccgcagGAGGTGAACGAGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTC-GATT
EST: GGATGGCGCGGTGGCCGACCGTACTAAGCCTCGCCGCCGCTACGCAGGAG GAGGTGAACGAGATGTGGGCGGGTCTTGGCTACTACCGTARGGCTCGATTT
genomic: GGATGGCGCGGTGGCCGACCGTACGAAGCCTCGCCGCCGCTACGCAGGAGgtacgcaaaa ... cttgccgcagGAGGTGAACGAGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTCGATTT
ttgtgaggttaaatgataatcgatttcttgattcgtggcttgatgcttgccgcagGAGGTGAACGAGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTCGATTTCTGCTGGAG
ttaaatgataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgcaaaaagcaatacttgataaatttgagtaagggaagcaaaataaatttcttttttgtggggaagattcgatctttgagcccaaatttttgtgaggttaaatgataatcgatttcttgattcgtggcttgatgcttgccgcagGAGGTGAACGAGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTCGATTTCTGCTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA