1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ttttgcatccacggcttccaggatcaaagcagttttttcgatgtaatttaacagtattcagaccaaacagaaaagaaagggtattttccacttcaaatcaCTCCACCCCTCCGCTCCGCCCCAGACCTCGCTACAAACCTGCCGCGAAAATAGCAGCCGCCCGTTTGCTCTCTCCCGTCTCCGCACTCCTCCCGCGATGA
species | Zea mays |
transcript | GRMZM2G421899_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGGGAGGAATCCCTTCCTCCGCGAGTCGCGAGCCGTGGAGATCCGTCCCA CTCCACCCCTCCGCTCCGCCCCAGACCTCGCTACAAACCTGCCGCGAAAATEST: gi|211417379|gb|FL229999.1|FL229999
genomic: GGGGAGGAATCCCTTCCTCCGCGAGTCGCGAGCCGTGGAGATCCGTCCCActccacccca ... cttcaaatcaCTCCACCCCTCCGCTCCGCCCCAGACCTCGCTACAAACCTGCCGCGAAAAT
EST: GGGGAGGAATCCCTTCCTCCGCGAGTCGCGAGCCGTGGAGATCCGTCCCA CTCCACCCCTCCGCTCCGCCCCAGACCTCGCTACAAACCTGCCGCGAAAATEST: gi|211417382|gb|FL230002.1|FL230002
genomic: GGGGAGGAATCCCTTCCTCCGCGAGTCGCGAGCCGTGGAGATCCGTCCCActccacccca ... cttcaaatcaCTCCACCCCTCCGCTCCGCCCCAGACCTCGCTACAAACCTGCCGCGAAAAT
EST: GGGGAGGAATCCCTTCCTCCGCGAGTCGCGAGCCGTGGAGATCCGTCCCA CTCCACCCCTCCGCTCCGCCCCAGACCTCGCTACAAACCTGCCGCGAAAATEST: gi|211417385|gb|FL230005.1|FL230005
genomic: GGGGAGGAATCCCTTCCTCCGCGAGTCGCGAGCCGTGGAGATCCGTCCCActccacccca ... cttcaaatcaCTCCACCCCTCCGCTCCGCCCCAGACCTCGCTACAAACCTGCCGCGAAAAT
EST: GGGGAGGAATCCCTTCCTCCGCGAGTCGCGAGCCGTGGAGATCCGTCCCA CTCCACCCCTCCGCTCCGCCCCAGACCTCGCTACAAACCTGCCGCGAAAATEST: gi|211417384|gb|FL230004.1|FL230004
genomic: GGGGAGGAATCCCTTCCTCCGCGAGTCGCGAGCCGTGGAGATCCGTCCCActccacccca ... cttcaaatcaCTCCACCCCTCCGCTCCGCCCCAGACCTCGCTACAAACCTGCCGCGAAAAT
EST: GGGGAGGAATCCCTTCCTCCGCGAGTCGCGAGCCGTGGAGATCCGTCCCA CTCCACCCCTCCGCTCCGCCCCAGACCTCGCTACAAACCTGCCGCGAAAAT
genomic: GGGGAGGAATCCCTTCCTCCGCGAGTCGCGAGCCGTGGAGATCCGTCCCActccacccca ... cttcaaatcaCTCCACCCCTCCGCTCCGCCCCAGACCTCGCTACAAACCTGCCGCGAAAAT
atttaacagtattcagaccaaacagaaaagaaagggtattttccacttcaaatcaCTCCACCCCTCCGCTCCGCCCCAGACCTCGCTACAAACCTGCCGCGAAAATAGCAGCCGCCCGTTTGCTCTCTCCCGTCTCCGCACTCCTCCCGCGATGA
atttaac putative branch site (score: 3)
ttttccacttc putative PPT
aaaagaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttgcatccacggcttccaggatcaaagcagttttttcgatgtaatttaacagtattcagaccaaacagaaaagaaagggtattttccacttcaaatcaCTCCACCCCTCCGCTCCGCCCCAGACCTCGCTACAAACCTGCCGCGAAAATAGCAGCCGCCCGTTTGCTCTCTCCCGTCTCCGCACTCCTCCCGCGATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- -tgcatcc
- - - - - - -gcttcca
- - - - - - - - - - -gatcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagaaa