1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttctgaacttcccattctatcattttcagtatttgtggtggttatgaatttatgataatgtttagctcacttgctgcacatttgctatttgctatgtagACAAGAACTGAAGGTTTCCAGTCCCTCGGGATCCTCCAGTCCTTGAGGAAGCTGTGGCAATACGAGGGAATTCGAGGCTTCTACAA
species | Zea mays |
transcript | GRMZM2G420119_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTGCAAAGACTGCGGTAGCACCACTGGAGAGGGTCAAGATCTTATTGCAG ACAAGAACTGAAGGTTTCCAGTCCCTCGGGATCCTCCAGTCCTTGAGGAAGEST: gi|31349393|gb|CD433750.1|CD433750
genomic: TTGCAAAGACTGCGGTAGCACCACTGGAGAGGGTCAAGATCTTATTGCAGgttctgaact ... tgctatgtagACAAGAACTGAAGGTTTCCAGTCCCTCGGGATCCTCCAGTCCTTGAGGAAG
EST: TTGCAAAGACTGCGGTAGCACCACTGGAGAGGGTCAAGATCTTATTGCAG ACAAGAACTGAAGGTTTCCAGTCCCTCGGGATCCTCCAGTCCTTGAGGAAG
genomic: TTGCAAAGACTGCGGTAGCACCACTGGAGAGGGTCAAGATCTTATTGCAGgttctgaact ... tgctatgtagACAAGAACTGAAGGTTTCCAGTCCCTCGGGATCCTCCAGTCCTTGAGGAAG
tgaatttatgataatgtttagctcacttgctgcacatttgctatttgctatgtagACAAGAACTGAAGGTTTCCAGTCCCTCGGGATCCTCCAGTCCTTGAGGAAGCTGTGGCAATACGAGGGAATTCGAGGCTTCTACAA
agctcac putative branch site (score: 68)
ttatgataatgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttctgaacttcccattctatcattttcagtatttgtggtggttatgaatttatgataatgtttagctcacttgctgcacatttgctatttgctatgtagACAAGAACTGAAGGTTTCCAGTCCCTCGGGATCCTCCAGTCCTTGAGGAAGCTGTGGCAATACGAGGGAATTCGAGGCTTCTACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG