1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gttttactcggttggctcttagtttttgctgctcgatcggctagcttgatctgcgggtttctcggcgatttaattttgggattggctggtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG
species | Zea mays |
transcript | GRMZM2G419694_T05 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTG---- -CAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|15057145|gb|BI361117.1|BI361117
genomic: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAGgttttactcg ... gtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: CGCACCCCCCAACGCGGTTCGA-TT-T--- GCAGGAAGGAGCGTGATGGCCCAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|76287758|gb|DV027326.1|DV027326
genomic: CGCACCCCCCAACGCGGTTCGATTTGTAAGgttttactcg ... gtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAG GCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|211258766|gb|FL031018.1|FL031018
genomic: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAGgttttactcg ... gtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAG GCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|60352182|gb|DN219155.1|DN219155
genomic: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAGgttttactcg ... gtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAG GCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|28986825|gb|CB351328.1|CB351328
genomic: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAGgttttactcg ... gtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGA-TT-T--- GCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|211258765|gb|FL031017.1|FL031017
genomic: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAGgttttactcg ... gtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTG---- -CAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|211027787|gb|FL306180.1|FL306180
genomic: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAGgttttactcg ... gtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAG GCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|211027791|gb|FL306184.1|FL306184
genomic: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAGgttttactcg ... gtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTG---- -CAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|211030233|gb|FL306195.1|FL306195
genomic: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAGgttttactcg ... gtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTG---- -CAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|211027797|gb|FL306190.1|FL306190
genomic: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAGgttttactcg ... gtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGA-TT-T--- GCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|211002077|gb|FL119250.1|FL119250
genomic: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAGgttttactcg ... gtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTG---- -CAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|211258760|gb|FL031012.1|FL031012
genomic: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAGgttttactcg ... gtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGA-TT-T--- GCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|211027796|gb|FL306189.1|FL306189
genomic: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAGgttttactcg ... gtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGA-TT-T--- GCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|211027786|gb|FL306179.1|FL306179
genomic: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAGgttttactcg ... gtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGA-TT-T--- GCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|211002075|gb|FL119248.1|FL119248
genomic: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAGgttttactcg ... gtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAG GCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|33103944|gb|CF063904.1|CF063904
genomic: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAGgttttactcg ... gtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAG GCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|211004849|gb|FL119252.1|FL119252
genomic: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAGgttttactcg ... gtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTG---- -CAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|211030232|gb|FL306194.1|FL306194
genomic: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAGgttttactcg ... gtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAG GCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|211002073|gb|FL119246.1|FL119246
genomic: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAGgttttactcg ... gtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAG GCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|15426911|gb|BI542733.1|BI542733
genomic: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAGgttttactcg ... gtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: CTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAG GCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|17929998|gb|BM266958.1|BM266958
genomic: CTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAGgttttactcg ... gtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAG GCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|91871992|gb|EB401949.1|EB401949
genomic: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAGgttttactcg ... gtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: CGATTTGTAAG GCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|60358602|gb|DN225575.1|DN225575
genomic: CGATTTGTAAGgttttactcg ... gtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAG GCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|18170724|gb|BM340564.1|BM340564
genomic: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAGgttttactcg ... gtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAG GCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|17931360|gb|BM268326.1|BM268326
genomic: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAGgttttactcg ... gtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAG GCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|211496223|gb|FL382412.1|FL382412
genomic: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAGgttttactcg ... gtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTG-AAG G-AG-------CGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|17929854|gb|BM266814.1|BM266814
genomic: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAGgttttactcg ... gtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: GATCCGTTCGCACCCCCCAACGCGGTTCGA-TT-T--- GCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|17931560|gb|BM268520.1|BM268520
genomic: GATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAGgttttactcg ... gtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAG GCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|211027785|gb|FL306178.1|FL306178
genomic: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAGgttttactcg ... gtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTG---- -CAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|211258763|gb|FL031015.1|FL031015
genomic: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAGgttttactcg ... gtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGA-TT-T--- GCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|211258768|gb|FL031020.1|FL031020
genomic: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAGgttttactcg ... gtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTG---- -CAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|211027792|gb|FL306185.1|FL306185
genomic: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAGgttttactcg ... gtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAG GCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|88749526|gb|DY533667.1|DY533667
genomic: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAGgttttactcg ... gtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: CCGTCTTCTTTCTATCCGTTCGCACCCCCCAACGCGTTTCGATTTGTAGG GCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|211027798|gb|FL306191.1|FL306191
genomic: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAGgttttactcg ... gtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTG---- -CAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|211004848|gb|FL119251.1|FL119251
genomic: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAGgttttactcg ... gtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAG GCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|211002072|gb|FL119245.1|FL119245
genomic: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAGgttttactcg ... gtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTG---- -CAGGAAGGAGCGTGATGGCCAAGACEST: gi|211027790|gb|FL306183.1|FL306183
genomic: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAGgttttactcg ... gtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGAC
EST: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGA-TT-T--- GCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|18168345|gb|BM338185.1|BM338185
genomic: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAGgttttactcg ... gtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAG GCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|211030231|gb|FL306193.1|FL306193
genomic: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAGgttttactcg ... gtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTG---- -CAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|211027794|gb|FL306187.1|FL306187
genomic: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAGgttttactcg ... gtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTG---- -CAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|211027793|gb|FL306186.1|FL306186
genomic: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAGgttttactcg ... gtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTG---- -CAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|211027788|gb|FL306181.1|FL306181
genomic: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAGgttttactcg ... gtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGA-TT-T--- GCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|18167465|gb|BM337304.1|BM337304
genomic: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAGgttttactcg ... gtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAG GCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|16922807|gb|BM075799.1|BM075799
genomic: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAGgttttactcg ... gtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: CCCCAACGCGGTTCGA-TT-T--- GCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|60349765|gb|DN216738.1|DN216738
genomic: CCCCAACGCGGTTCGATTTGTAAGgttttactcg ... gtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGA-TT-T--- GCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|17931323|gb|BM268289.1|BM268289
genomic: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAGgttttactcg ... gtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGA-TT-T--- GCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|211002074|gb|FL119247.1|FL119247
genomic: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAGgttttactcg ... gtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTG---- -CAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|78079144|gb|DV507556.1|DV507556
genomic: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAGgttttactcg ... gtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGA-TT-T--- GCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|15177541|gb|BI398480.1|BI398480
genomic: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAGgttttactcg ... gtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTG---- -CAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|16922901|gb|BM075893.1|BM075893
genomic: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAGgttttactcg ... gtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGA-TT-T--- GCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|60353565|gb|DN220538.1|DN220538
genomic: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAGgttttactcg ... gtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGA-TT-T--- GCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|91048098|gb|EB158516.1|EB158516
genomic: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAGgttttactcg ... gtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGA-TT-T--- GCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|211027789|gb|FL306182.1|FL306182
genomic: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAGgttttactcg ... gtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGA-TT-T--- GCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|60352183|gb|DN219156.1|DN219156
genomic: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAGgttttactcg ... gtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAG GCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
genomic: CCGTCTTCGTTCGATCCGTTCGCACCCCCCAACGCGGTTCGATTTGTAAGgttttactcg ... gtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
gcttgatctgcgggtttctcggcgatttaattttgggattggctggtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG
atttaat putative branch site (score: 4)
atttaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttactcggttggctcttagtttttgctgctcgatcggctagcttgatctgcgggtttctcggcgatttaattttgggattggctggtgcatgtagGCAGGAAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA