Sequence
atgc intronic sequence ATGC exonic sequencegtaaccaaacccagcccaaaccccaagaaagatggatagaacagtgaaacgtcacgccattcccgctcacctccactcctgattggtactaccagtaccagaatagaacagcgagagattgatagataaactgacgaccggttttcgttgatggctgcagCAAACCAACACTGCCGACATGCTGGATCTGGCTGTGGACTACATCAAGGATCTTCAGAAGCAGGTCAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G417597_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os09g31300.1 (Oryza sativa), 3'ss of exon 3
gtaaccaaacccagcccaaaccccaagaaagatggatagaacagtgaaacgtcacgccattcccgctcacctccactcctgattggtactaccagtaccagaatagaacagcgagagattgatagataaactgacgaccggttttcgttgatggctgcagCAAACCAACACTGCCGACATGCTGGATCTGGCTGTGGACTACATCAAGGATCTTCAGAAGCAGGTCAAG
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------------------------------------------------aaaaaaaattactaacactgtactccagtgtgagctactactactagtactag--ctgatgagctgaccgtttgtgaat----------ttgggttttggttttacttgcagCAAACCAACACTGCTGACATGTTGGATCTTGCCGTGGACTACATCAAGGAGCTCCAGAAGCAGGTCAAG
upper sequence: GRMZM2G417597_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os09g31300.2 (Oryza sativa), 3'ss of exon 3
gtaaccaaacccagcccaaaccccaagaaagatggatagaacagtgaaacgtcacgccattcccgctcacctccactcctgattggtactaccagtaccagaatagaacagcgagagattgatagataaactgacgaccggttttcgttgatggctgcagCAAACCAACACTGCCGACATGCTGGATCTGGCTGTGGACTACATCAAGGATCTTCAGAAGCAGGTCAAG
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------------------------------------------------aaaaaaaattactaacactgtactccagtgtgagctactactactagtactag--ctgatgagctgaccgtttgtgaat----------ttgggttttggttttacttgcagCAAACCAACACTGCTGACATGTTGGATCTTGCCGTGGACTACATCAAGGAGCTCCAGAAGCAG------
upper sequence: GRMZM2G417597_T02 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA10G12150.1 (Glycine max), 3'ss of exon 5
gtaaccaaacccagcccaaaccccaagaaagatggatagaacagtgaaacgtcacgccattcccgctcacctccactcctgattggtactaccagtaccagaatagaacagcgagagattgatagataaactgacgaccggttttcgttgatggc---tgcagCAAACCAACACTGCCGACATGCTGGATCTGGCTGTGGACTACATCAAGGATCTTCAGAAGCAGGTCAAG
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-------------------------------------------------------------gtaagacacataaaagcacgtttgattgtgg-aatatgtaaattatatgtcacatgcgatgtagttgtattggaaatttaacattcttgatgctctttgcagCAAACCAACACAGCAGACATGTTGGACTTGGCTGTTGAATACATTAAAGATCTTCAGAAACAATTCAAG
upper sequence: GRMZM2G417597_T02 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA02G29830.1 (Glycine max), 3'ss of exon 5
gtaaccaaacccagcccaaaccccaagaaagatggatagaacagtgaaacgtcacgccattcccgctcacctccactcctgattggtactaccagtaccaga-atagaacagcgagagattgatagataaactgacgaccggttttcgttgatggctgcagCAAACCAACACTGCCGACATGCTGGATCTGGCTGTGGACTACATCAAGGATCTTCAGAAGCAGGTCAAG
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-------------------------------------------gtaaga-gacacataa-----gcacat-ttgatttctggaatatgtaaattatgttacatatggtgtagttgtggttggaaagttaacattcttgatgctcttaattg------gcagCAAACCAACACAGCAGACATGTTGGACTTGGCTGTTGAATACATTAAAGATCTTCAGAAACAATTCAAG
upper sequence: GRMZM2G417597_T02 (Zea mays), 3'ss of exon 1
lower sequence: Vv08s0007g07810.t01 (Vitis vinifera), 3'ss of exon 4
gtaaccaaacccagcccaaaccccaagaaagatggatagaacagtgaaacgtc-acgccattcccgctcacctccactcctgattggtactaccagtaccagaatagaacagcgagagattgatagataaactgacgaccggttttcgttgatggctgcagCAAACCAACACTGCCGACATGCTGGATCTGGCTGTGGACTACATCAAGGATCTTCAGAAGCAGGTCAAG
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-------------------------------------------gtagaatttctatgaaattt----tcctctctggttg-gataaattttttcaatgtttcaattcaacttcta---attaatatctg---tga------attcttcttg------gcagCAAACCAACACTGCAGACATGTTAGATTTGGCCGTGGAATACATTAAGGACCTTCAGAAACAGTACAATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211055978|gb|FL460127.1|FL460127EST: TCAGCGAGCGGATACGGAAGCTGCAGGAGCTCGTGCCCAACATGGAAAAG CAAACCAACACTGCCGACATGCTGGATCTGGCTGTGGACTACATCAAGGAT
genomic: TCAGCGAGCGGATACGGAAGCTGCAGGAGCTCGTGCCCAACATGGAAAAGgtaaccaaac ... atggctgcagCAAACCAACACTGCCGACATGCTGGATCTGGCTGTGGACTACATCAAGGAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaacagcgagagattgatagataaactgacgaccggttttcgttgatggctgcagCAAACCAACACTGCCGACATGCTGGATCTGGCTGTGGACTACATCAAGGATCTTCAGAAGCAGGTCAAG
atagataaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaccaaacccagcccaaaccccaagaaagatggatagaacagtgaaacgtcacgccattcccgctcacctccactcctgattggtactaccagtaccagaatagaacagcgagagattgatagataaactgacgaccggttttcgttgatggctgcagCAAACCAACACTGCCGACATGCTGGATCTGGCTGTGGACTACATCAAGGATCTTCAGAAGCAGGTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC