1 5' 3' | 2 5' 3' | 3 5' 3' |
...gtctacagaaatatcgtcggagtttcctctgaaccagagtttcttacctttcccaccgcctaactcaggaatccttttgctttcatgcttcccatcccagCCAAAATGTCTTCGGCGATACAATCTGCGGTTCGTGACGTCGTCAGTGCAAGACAAGGCCGGAGTTAGCAACCCTGACCAGAAGCAGGAGCGTAGCACCA
species | Zea mays |
transcript | GRMZM2G416817_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
acctttcccaccgcctaactcaggaatccttttgctttcatgcttcccatcccagCCAAAATGTCTTCGGCGATACAATCTGCGGTTCGTGACGTCGTCAGTGCAAGACAAGGCCGGAGTTAGCAACCCTGACCAGAAGCAGGAGCGTAGCACCA
gcctaac putative branch site (score: 2)
tccttttgctttcatg putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctacagaaatatcgtcggagtttcctctgaaccagagtttcttacctttcccaccgcctaactcaggaatccttttgctttcatgcttcccatcccagCCAAAATGTCTTCGGCGATACAATCTGCGGTTCGTGACGTCGTCAGTGCAAGACAAGGCCGGAGTTAGCAACCCTGACCAGAAGCAGGAGCGTAGCACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - acagaaa
- - - - - - - - - - - - - - ctgaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcatgc