1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagccagcatccccctgtttctcccctttccccctccattcgtttcagtctgctgattcgtttggtgcaattttcgcccgaatcggtgcggattttggcgcgggaattgcgcttttacagGTTCTTGATGAAGCTGAACAACGAAACGGTGACCATCGAGCTTAAGAACGGCACCGTCGTACACGGAACCATTACCG
species | Zea mays |
transcript | GRMZM2G416061_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAACCCTAGCTTTACCTCCCCACAAGCGCCTCCAAGATGAAGCTCGTCAG GTTCTTGATGAAGCTGAACAACGAAACGGTGACCATCGAGCTTAAGAACGGEST: gi|211405279|gb|FL027503.1|FL027503
genomic: AAACCCTAGCTTTACCTCCCCACAAGCGCCTCCAAGATGAAGCTCGTCAGgtaagccagc ... gcttttacagGTTCTTGATGAAGCTGAACAACGAAACGGTGACCATCGAGCTTAAGAACGG
EST: AAACCCTAGCTTTACCTCCCCACAAGCGCCTCCAAGATGAAGCTCGTCAG GTTCTTGATGAAGCTGAACAACGAAACGGTGACCATCGAGCTTAAGAACGGEST: gi|211405280|gb|FL027504.1|FL027504
genomic: AAACCCTAGCTTTACCTCCCCACAAGCGCCTCCAAGATGAAGCTCGTCAGgtaagccagc ... gcttttacagGTTCTTGATGAAGCTGAACAACGAAACGGTGACCATCGAGCTTAAGAACGG
EST: AAACCCTAGCTTTACCTCCCCACAAGCSCCTCCAAGATGAAGCTCGTCAG GTTCTTGATGAAGCTGAACAACGAAACGGTGACCATCGAGCTTAAGAACGG
genomic: AAACCCTAGCTTTACCTCCCCACAAGCGCCTCCAAGATGAAGCTCGTCAGgtaagccagc ... gcttttacagGTTCTTGATGAAGCTGAACAACGAAACGGTGACCATCGAGCTTAAGAACGG
tgcaattttcgcccgaatcggtgcggattttggcgcgggaattgcgcttttacagGTTCTTGATGAAGCTGAACAACGAAACGGTGACCATCGAGCTTAAGAACGGCACCGTCGTACACGGAACCATTACCG
cgctttt CT-rich tract
ttttaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagccagcatccccctgtttctcccctttccccctccattcgtttcagtctgctgattcgtttggtgcaattttcgcccgaatcggtgcggattttggcgcgggaattgcgcttttacagGTTCTTGATGAAGCTGAACAACGAAACGGTGACCATCGAGCTTAAGAACGGCACCGTCGTACACGGAACCATTACCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC