1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...attgaaatgtgctgaatgctctgtactgatgtctaatgctacttcagagataatacatgatcagtgtcccttaatcattattcttctgtatttatggcagGATCCCTGTTCGCGTTTTCAGTTGCTAAGGAGGAGACCAAGAAGCTCGGCACCGTGATCGGTATCGATCTCGGAACCACCTACTCCTGTGTGGGTGTGTA
species | Zea mays |
transcript | GRMZM2G415007_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTTCGTGTATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAG GATCCCTGTTCGCGTTTTCAGTTGCTAAGGAGGAGACCAAGAAGCTCGGCAEST: gi|67043231|gb|CO469486.1|CO469486
genomic: GTTCGTGGATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAGgtaccacatg ... tttatggcagGATCCCTGTTCGCGTTTTCAGTTGCTAAGGAGGAGACCAAGAAGCTCGGCA
EST: C-TCGATCGGGTTCGTGGATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAG GATCTCTGTCCGCGTTTTCAGTTGCTAAGGAGGAGACCAAGAAGCTCGGCAEST: gi|148946714|gb|EC891977.2|EC891977
genomic: CATGGATCGGGTTCGTGGATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAGgtaccacatg ... tttatggcagGATCCCTGTTCGCGTTTTCAGTTGCTAAGGAGGAGACCAAGAAGCTCGGCA
EST: CATGGATCGGGTTCGTGGATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAG GATCCCTGTTCGCGTTTTCAGTTGCTAAGGAGGAGACCAAGAAGCTCGGCAEST: gi|148970739|gb|EE021473.2|EE021473
genomic: CATGGATCGGGTTCGTGGATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAGgtaccacatg ... tttatggcagGATCCCTGTTCGCGTTTTCAGTTGCTAAGGAGGAGACCAAGAAGCTCGGCA
EST: CATGGATCGGGTTCGTGGATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAG GATCCCTGTTCGCGTTTTCAGTTGCTAAGGAGGAGACCAAGAAGCTCGGCA
genomic: CATGGATCGGGTTCGTGGATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAGgtaccacatg ... tttatggcagGATCCCTGTTCGCGTTTTCAGTTGCTAAGGAGGAGACCAAGAAGCTCGGCA
agagataatacatgatcagtgtcccttaatcattattcttctgtatttatggcagGATCCCTGTTCGCGTTTTCAGTTGCTAAGGAGGAGACCAAGAAGCTCGGCACCGTGATCGGTATCGATCTCGGAACCACCTACTCCTGTGTGGGTGTGTA
ccttaat putative branch site (score: 2064)
ttaatcattattctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgaaatgtgctgaatgctctgtactgatgtctaatgctacttcagagataatacatgatcagtgtcccttaatcattattcttctgtatttatggcagGATCCCTGTTCGCGTTTTCAGTTGCTAAGGAGGAGACCAAGAAGCTCGGCACCGTGATCGGTATCGATCTCGGAACCACCTACTCCTGTGTGGGTGTGTA
- - -aatgtgc
- - - - - - tgaatgc
- - - - - - - - - - - - -ctgatgt
- - - - - - - - - - - - - - - - - - tgctact
- - - - - - - - - - - - - - - - - - - - - - - - - - atacatg