1 5' 3' | 2 5' 3' | 3 5' 3' |
...aagatttgattattatattggttgaaaacatacagtatgagttgctgatatagtgaaaactttgctgcgattatttgataaaatccaatgctctgtgcagGTTACTTCACCATATGGGAACACCTTGCATCACAGTGAGAATTCTACAGTTGGTCAATTTGCATTCACAACCGCAGAAGCTGGAAACTACGTTGCATGCT
species | Zea mays |
transcript | GRMZM2G414569_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCATCATGTTCGAGTCCCACCCCTATTCGCATCCCACCATCGCCGTCAAG GTTACTTCACCATATGGGAACACCTTGCATCACAGTGAGAATTCTACAGTTEST: gi|60352391|gb|DN219364.1|DN219364
genomic: CCATCATGTACGAGTCCCACCCCTATTCGCACCCCACCATCGCCGTCAAGgtatcgcttc ... ctctgtgcagGTTACTTCACCATATGGGAACACCTTGCATCACAGTGAGAATTCTACAGTT
EST: CCATCATGTTCGAGTCCCACCCCTATTCGCATCCCACCATCGCCGTCAAG GTTACTTCACCATATGGGAATACCTTGCATCACAGTGAGAATTCTACAGTTEST: gi|91869882|gb|EB400589.1|EB400589
genomic: CCATCATGTACGAGTCCCACCCCTATTCGCACCCCACCATCGCCGTCAAGgtatcgcttc ... ctctgtgcagGTTACTTCACCATATGGGAACACCTTGCATCACAGTGAGAATTCTACAGTT
EST: AGTCCCACCCCTATTCGCACCCCACCATCGCCGTCAAG GTTACTTCACCATATGGGAACACCTTGCATCACAGTGAGAATTTTACAGTTEST: gi|37422451|gb|CF648936.1|CF648936
genomic: AGTCCCACCCCTATTCGCACCCCACCATCGCCGTCAAGgtatcgcttc ... ctctgtgcagGTTACTTCACCATATGGGAACACCTTGCATCACAGTGAGAATTCTACAGTT
EST: CCATCATGTACGAGTCCCACCCCTATTCGCACCCCACCATCGCCGTCAAG GTTACTTCACCATATGGGAACACCTTGCEST: gi|60394039|gb|DN226909.1|DN226909
genomic: CCATCATGTACGAGTCCCACCCCTATTCGCACCCCACCATCGCCGTCAAGgtatcgcttc ... ctctgtgcagGTTACTTCACCATATGGGAACACCTTGC
EST: CACCCCTATTCGCATCCCACCATCGCCGTCAAG GTTACTTCACCATATGGGAATACCTTGCATCACAGTGAGAATTCTACAGTTEST: gi|91869884|gb|EB400590.1|EB400590
genomic: CACCCCTATTCGCACCCCACCATCGCCGTCAAGgtatcgcttc ... ctctgtgcagGTTACTTCACCATATGGGAACACCTTGCATCACAGTGAGAATTCTACAGTT
EST: AGTCCCACCCCTATTCGCACCCCACCATCGCCGTCAAG GTTACTTCACCATATGGGAACACCTTGCATCACAGTGAGAATTCTACAGTTEST: gi|5325020|gb|AI783211.1|AI783211
genomic: AGTCCCACCCCTATTCGCACCCCACCATCGCCGTCAAGgtatcgcttc ... ctctgtgcagGTTACTTCACCATATGGGAACACCTTGCATCACAGTGAGAATTCTACAGTT
EST: CCATCATGTTCGAGTCCCACCCCTATTCGCATCCCACCATCGCCGTCAAG GTTACTTCACCATATGGGAACACCTTGCATCACAGTGAGAATTCTACAGTTEST: gi|211528538|gb|FL329337.1|FL329337
genomic: CCATCATGTACGAGTCCCACCCCTATTCGCACCCCACCATCGCCGTCAAGgtatcgcttc ... ctctgtgcagGTTACTTCACCATATGGGAACACCTTGCATCACAGTGAGAATTCTACAGTT
EST: CCATCATGTACGAGTCCCACCCCTATTCGCACCCCACCATCGCCGTCAAG GTTACTTCACCATATGGGAACACCTTGCATCACAGTGAGAATTCTACAGTTEST: gi|40286941|gb|CK327333.1|CK327333
genomic: CCATCATGTACGAGTCCCACCCCTATTCGCACCCCACCATCGCCGTCAAGgtatcgcttc ... ctctgtgcagGTTACTTCACCATATGGGAACACCTTGCATCACAGTGAGAATTCTACAGTT
EST: CCATCATGTTCGAGTCCCACCCCTATTCGCATCCCACCATCGCCGTCAAG GTTACTTCACCATATGGGAACACCTTGCATCACAGTGAGAATTCTACAGTTEST: gi|40287068|gb|CK327460.1|CK327460
genomic: CCATCATGTACGAGTCCCACCCCTATTCGCACCCCACCATCGCCGTCAAGgtatcgcttc ... ctctgtgcagGTTACTTCACCATATGGGAACACCTTGCATCACAGTGAGAATTCTACAGTT
EST: CCATCATGTTCGAGTCCCACCCCTATTCGCATCCCACCATCGCCGTCAAG GTTACTTCACCATATGGGAACACCTTGCATCACAGTGAGAATTCTACAGTTEST: gi|18174124|gb|BM349512.1|BM349512
genomic: CCATCATGTACGAGTCCCACCCCTATTCGCACCCCACCATCGCCGTCAAGgtatcgcttc ... ctctgtgcagGTTACTTCACCATATGGGAACACCTTGCATCACAGTGAGAATTCTACAGTT
EST: GCACCCCACCATCGCCGTCAAG GTTACTTCACCATATGGGAACACCTTGCATCACAGTGAGAATTCTACAGTTEST: gi|61119681|gb|DN560642.1|DN560642
genomic: GCACCCCACCATCGCCGTCAAGgtatcgcttc ... ctctgtgcagGTTACTTCACCATATGGGAACACCTTGCATCACAGTGAGAATTCTACAGTT
EST: CCATCATGTTCGAGTCCCACCCCTATTCGCATCCCACCATCGCCGTCAAG GTTACTTCACCATATGGGAACACCTTGCATCACAGTGAGEST: gi|6020792|gb|AW065720.1|AW065720
genomic: CCATCATGTACGAGTCCCACCCCTATTCGCACCCCACCATCGCCGTCAAGgtatcgcttc ... ctctgtgcagGTTACTTCACCATATGGGAACACCTTGCATCACAGTGAG
EST: CCATCATGTTCGAGTCCCACCCCTATTCGCATCCCACCATCGCCGTCAAG GTTACTTCACCATATGGGAACACCTTGCATCACAGTGAGAATTCTACAGTTEST: gi|6020682|gb|AW065490.1|AW065490
genomic: CCATCATGTACGAGTCCCACCCCTATTCGCACCCCACCATCGCCGTCAAGgtatcgcttc ... ctctgtgcagGTTACTTCACCATATGGGAACACCTTGCATCACAGTGAGAATTCTACAGTT
EST: ATCATGTTCGAGTCCCACCCCT-TTCGCATCCCACCATTNCGCCGTCAAG GTTACTTTCACCATATGGGAACACCTTGCATCACAGTGAGAATTCTACAGT
genomic: ATCATGTACGAGTCCCACCCCTATTCGCACCCCACCA-T-CGCCGTCAAGgtatcgcttc ... ctctgtgcagGTTAC-TTCACCATATGGGAACACCTTGCATCACAGTGAGAATTCTACAGT
tgatatagtgaaaactttgctgcgattatttgataaaatccaatgctctgtgcagGTTACTTCACCATATGGGAACACCTTGCATCACAGTGAGAATTCTACAGTTGGTCAATTTGCATTCACAACCGCAGAAGCTGGAAACTACGTTGCATGCT
attatttgataaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagatttgattattatattggttgaaaacatacagtatgagttgctgatatagtgaaaactttgctgcgattatttgataaaatccaatgctctgtgcagGTTACTTCACCATATGGGAACACCTTGCATCACAGTGAGAATTCTACAGTTGGTCAATTTGCATTCACAACCGCAGAAGCTGGAAACTACGTTGCATGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - -ttggttg
- - - - - - - - - - - - - -acataca
- - - - - - - - - - - - - - - - - - - - gttgctg