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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgtaccggctcttagctgcgtcctctctccatattctccttctattggatcagtgttttgaagaaaaaaactaatttgagtatttgaccatgccgcggcactgcatttttcgcgggtgctggattgctttctcggggaaccagGAGAGGGAGGCGAACAAGGAGATGGTTGTCTACCTTGTCGACGCCTCGCCCAAAATGTTCACCCCTGCCACCACCCAG

Basic information

species Zea mays
transcript GRMZM2G414496_T08
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G414496_T07 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os07g08729.1 (Oryza sativa), 3'ss of exon 1
gttcgtaccggctcttagctgcgtcctctctccatattctccttctattggatcagtgttttgaagaaaaaaactaatttgagtatttgaccatgccgcggcactgcatttttcgcgggtgctggattgctttctcgg-ggaaccagGAGAGGGAGGCGAACAAGGAGATGGTTGTCTACCTTGTCGACGCCTCGCCCAAAATGTTCACCCCTGCCACCACCCAG
                                     || | ||| |     |  | | ||            |  ||       |||  |  || | ||   |       ||   | | | |   ||| ||||| || || | |||||||||||||| |||||||||||||| ||||||||  |||||||||||||||| |||||||||||||| ||||     
------------------------------------gtcgcgttccaccctgttcgagcttc-----------cctatcccccattttttctgtggctcgaatcctgtgaattgatgagcggt---ttggtttcttggagggaacagGAGAGGGAGGCCAACAAGGAGATGGTCGTCTACCTCATCGACGCCTCGCCCAAGATGTTCACCCCTGCGACCAAG---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211344603|gb|FK981657.1|FK981657
EST:     CAGAGGGGATCTTCCGCGACGACAGCGATGAAGACGAAGACAGTGTCCAG                         GAGAGGGAGGCGAACAAGGAGATGGTTGTCTACCTTGTCGACGCCTCGCCC
genomic: CAGAGGGGATCTTCCGCGACGACAGCGATGAAGACGAAGACAGTGTCCAGgttcgtaccg ... ggggaaccagGAGAGGGAGGCGAACAAGGAGATGGTTGTCTACCTTGTCGACGCCTCGCCC
EST: gi|211344604|gb|FK981658.1|FK981658
EST:     CAGA-GGGATCTTCCGCGACGACAGCGATGAAGACGAAGACAGTGTCCAG                         GAGAGGGAGGCGAACAAGGAGATGGTTGTCTACCTTGTCGACGCCTCGCCC
genomic: CAGAGGGGATCTTCCGCGACGACAGCGATGAAGACGAAGACAGTGTCCAGgttcgtaccg ... ggggaaccagGAGAGGGAGGCGAACAAGGAGATGGTTGTCTACCTTGTCGACGCCTCGCCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgccgcggcactgcatttttcgcgggtgctggattgctttctcggggaaccagGAGAGGGAGGCGAACAAGGAGATGGTTGTCTACCTTGTCGACGCCTCGCCCAAAATGTTCACCCCTGCCACCACCCAG
                                      ctttctcg  CT-rich tract
                attttt  TA-rich tract