1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gttataaccagcgactttacttcagttatttcatatgctttatgtccttctgccaactattcatttcattgtacagtattttagagtgttaacctcagaatctcatgtaccagGTATTATCAAACTTGCTTTATTACTACGGGACACGTGGGTTAGTCAAGGAAAGTTTGCTTCAGCGGTACTTCAGCATG
species | Zea mays |
transcript | GRMZM2G413857_T05 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTTCACCTGTATGCAAAGCCCCCTCCTGGAGCGAGTGGCTGTATAATAAG GTATTATCAAACTTGCTTTATTACTACGGGACACGTGGGTTAGTCAAGGAAEST: gi|19351457|gb|BM895989.1|BM895989
genomic: TTTCACCTGTATGCAAAGCCCCCTCCTGGAGCGAGTGGCTGTATAATAAGgttataacca ... catgtaccagGTATTATCAAACTTGCTTTATTACTACGGGACACGTGGGTTAGTCAAGGAA
EST: TTTCACCTGTATGCAAAGCCCCCTCCTGGAGCGAGTGGCTGTATAATAAG GTATTATCAAACTGGCTTTATTACTACGGGACACGTGGGTTAGTCAAGGAAEST: gi|21395240|gb|BQ539670.1|BQ539670
genomic: TTTCACCTGTATGCAAAGCCCCCTCCTGGAGCGAGTGGCTGTATAATAAGgttataacca ... catgtaccagGTATTATCAAACTTGCTTTATTACTACGGGACACGTGGGTTAGTCAAGGAA
EST: TTTCACCTGTATGCAAAGCCCCCTCCTGGAGCGAGTGGCTGTATAATAAG GTATTATCAAACTTGCTTTATTACTACGGGACACGTGGGTTAGTCAAGGAAEST: gi|87152801|gb|DY397590.1|DY397590
genomic: TTTCACCTGTATGCAAAGCCCCCTCCTGGAGCGAGTGGCTGTATAATAAGgttataacca ... catgtaccagGTATTATCAAACTTGCTTTATTACTACGGGACACGTGGGTTAGTCAAGGAA
EST: TTTCACCTGTATGCAAAGCCCCCTCCTGGAGCGAGTGGCTGTATAATAAG GTATTATCAAACTTGCTTTATTACTACGGGACACGTGGGTTAGTCAAGGAA
genomic: TTTCACCTGTATGCAAAGCCCCCTCCTGGAGCGAGTGGCTGTATAATAAGgttataacca ... catgtaccagGTATTATCAAACTTGCTTTATTACTACGGGACACGTGGGTTAGTCAAGGAA
attcatttcattgtacagtattttagagtgttaacctcagaatctcatgtaccagGTATTATCAAACTTGCTTTATTACTACGGGACACGTGGGTTAGTCAAGGAAAGTTTGCTTCAGCGGTACTTCAGCATG
tgttaac putative branch site (score: 2)
agtatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttataaccagcgactttacttcagttatttcatatgctttatgtccttctgccaactattcatttcattgtacagtattttagagtgttaacctcagaatctcatgtaccagGTATTATCAAACTTGCTTTATTACTACGGGACACGTGGGTTAGTCAAGGAAAGTTTGCTTCAGCGGTACTTCAGCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA