1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gcaatacagcaaatcggaacatgtctggttgtattgttcctgtgtatggtacggagttctgatcaccctaaacatgtgcatgtgacctgtgtttcctcagGAGCATAGAGTAAGAACGAGGCATGGCTCTCTTTCGGTTTCTGTGTATGGAGACGAGGACAAGCCCGCGCTCGTAACTTATCCGGATGTAGCCTTAAATC
species | Zea mays |
transcript | GRMZM2G413857_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCAGCGGCTCCGTGTCGGTCGACGTCGAGCGGATCTTCTTCGGCGGCAAG GAGCATAGAGTAAGAACGAGGCATGGCTCTCTTTCGGTTTCTGTGTATGGAEST: gi|211370584|gb|FL353380.1|FL353380
genomic: CCAGCGGCTCCGTGTCGGTCGACGTCGAGCGGATCTTCTTCGGCGGCAAGgtccgtgcgc ... gtttcctcagGAGCATAGAGTAAGAACGAGGCATGGCTCTCTTTCGGTTTCTGTGTATGGA
EST: CCAGCGGCTCCGTGTCGGTCGACGTCGAGCGGATCTTCTTCGGCGGCAAG GAGCATCGAGTAAGAACGAGGCATGGCTCTCTTTCGGTTTCTGTGTATGGAEST: gi|71443344|gb|DR824394.1|DR824394
genomic: CCAGCGGCTCCGTGTCGGTCGACGTCGAGCGGATCTTCTTCGGCGGCAAGgtccgtgcgc ... gtttcctcagGAGCATAGAGTAAGAACGAGGCATGGCTCTCTTTCGGTTTCTGTGTATGGA
EST: CCAGCGGCTCCGTGTCGGTCGACGTCGAGCGGATCTTCTTCGGCGGCAAG GAGCATAGAGTAAGAACGAGGCATGGCTCTCTTTCGGTTTCTGTGTATGGAEST: gi|71443847|gb|DR824897.1|DR824897
genomic: CCAGCGGCTCCGTGTCGGTCGACGTCGAGCGGATCTTCTTCGGCGGCAAGgtccgtgcgc ... gtttcctcagGAGCATAGAGTAAGAACGAGGCATGGCTCTCTTTCGGTTTCTGTGTATGGA
EST: CCAGCGGCTCCGTGTCGGTCGACGTCGAGCGGATCTTCTTCGGCGGCAAG GAGCATAGAGTAAGAACGAGGCATGGCTCTCTTTCGGTTTCTGTGTATGGA
genomic: CCAGCGGCTCCGTGTCGGTCGACGTCGAGCGGATCTTCTTCGGCGGCAAGgtccgtgcgc ... gtttcctcagGAGCATAGAGTAAGAACGAGGCATGGCTCTCTTTCGGTTTCTGTGTATGGA
atggtacggagttctgatcaccctaaacatgtgcatgtgacctgtgtttcctcagGAGCATAGAGTAAGAACGAGGCATGGCTCTCTTTCGGTTTCTGTGTATGGAGACGAGGACAAGCCCGCGCTCGTAACTTATCCGGATGTAGCCTTAAATC
ccctaaa putative branch site (score: 519)
tgtttcctc putative PPT
taaacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaatacagcaaatcggaacatgtctggttgtattgttcctgtgtatggtacggagttctgatcaccctaaacatgtgcatgtgacctgtgtttcctcagGAGCATAGAGTAAGAACGAGGCATGGCTCTCTTTCGGTTTCTGTGTATGGAGACGAGGACAAGCCCGCGCTCGTAACTTATCCGGATGTAGCCTTAAATC
- - - cagcaaa
- - - - - - - - gaacatg
- - - - - - - - - - - - - - -tgtattg
- - - - - - - - - - - - - - - - - - - - -gtgtatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatgt