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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgcgcgcgcgtgccatcgctcctagaattccgcgatctcggtcgctgtctgcacatctgactcgacgcgctcttggtgtggcatttaatttgctgcgctttcagGGACGGCGGTGGCCATGCGGCTGGGGGATCGTGGGTAGGGGAGGACGGACGCGTGTGGCACTCCCACGACGGCCTCGCGCCCCACTCCCACGAGCCCATC

Basic information

species Zea mays
transcript GRMZM2G413652_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G413652_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os05g49050.1 (Oryza sativa), 3'ss of exon 1
gtgcgcgcgcgcgtgccatcgctcctagaattccgcgatctcggtcgctg-tctgcacatctgactcgacgcgctcttggtgtggcatttaatttgctgcgctttcagGGACGGCGGTGGCCATGCGGCTGGGGGATCGTGGGTAGGGGAGGACGGACGCGTGTGGCACTCCCACGACGGCCTCGCGCCCCACTCCCACGAGCCCATC
        | ||||||   ||  | |      ||    | ||||  | || | || ||   |||     | | ||  ||        ||| | | |  |||||| |||||||||| |       |  |  || || |||||||| ||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||
--------gtgcgtgcagccgggcatctgcccccct--tttcggctggtggtttgtactgatgatctcgctcactgctgcc----tgtttgactcg--gcgcttgcagGGACGGCAGCCATGGCGGCGGCGGCGGCTCGTGGGTCGGGGAGGACGGGCGCGTGTGGCACTCGCACGACGGCCTCGCGCCGCACTCCCACGAGCCCATC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcacatctgactcgacgcgctcttggtgtggcatttaatttgctgcgctttcagGGACGGCGGTGGCCATGCGGCTGGGGGATCGTGGGTAGGGGAGGACGGACGCGTGTGGCACTCCCACGACGGCCTCGCGCCCCACTCCCACGAGCCCATC
                                              cgctttc  CT-rich tract
                                 atttaattt  TA-rich tract